Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | /RES-TIGR02293 |
| Location | 2368931..2369841 | Replicon | chromosome |
| Accession | NZ_CP069599 | ||
| Organism | Dickeya dianthicola strain 16MB01 | ||
Toxin (Protein)
| Gene name | - | Uniprot ID | - |
| Locus tag | JRZ87_RS10895 | Protein ID | WP_024105930.1 |
| Coordinates | 2369371..2369841 (+) | Length | 157 a.a. |
Antitoxin (Protein)
| Gene name | - | Uniprot ID | A0A3A4C852 |
| Locus tag | JRZ87_RS10890 | Protein ID | WP_024105929.1 |
| Coordinates | 2368931..2369374 (+) | Length | 148 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JRZ87_RS10865 (JRZ87_10860) | 2363989..2364660 | + | 672 | WP_024105924.1 | dethiobiotin synthase | - |
| JRZ87_RS10870 (JRZ87_10865) | 2364934..2365290 | - | 357 | WP_024105925.1 | DUF1283 family protein | - |
| JRZ87_RS10875 (JRZ87_10870) | 2365496..2366245 | - | 750 | WP_024105926.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| JRZ87_RS10880 (JRZ87_10875) | 2366549..2367775 | - | 1227 | WP_024105927.1 | glycosyl transferase | - |
| JRZ87_RS10885 (JRZ87_10880) | 2367794..2368621 | - | 828 | WP_024105928.1 | mannosyl-3-phosphoglycerate phosphatase-related protein | - |
| JRZ87_RS10890 (JRZ87_10885) | 2368931..2369374 | + | 444 | WP_024105929.1 | DUF2384 domain-containing protein | Antitoxin |
| JRZ87_RS10895 (JRZ87_10890) | 2369371..2369841 | + | 471 | WP_024105930.1 | RES family NAD+ phosphorylase | Toxin |
| JRZ87_RS10900 (JRZ87_10895) | 2369847..2370134 | + | 288 | WP_024105931.1 | hypothetical protein | - |
| JRZ87_RS10905 (JRZ87_10900) | 2370517..2371521 | - | 1005 | WP_103415876.1 | acyltransferase family protein | - |
| JRZ87_RS10910 (JRZ87_10905) | 2372213..2373174 | + | 962 | Protein_2147 | dicarboxylate transporter/tellurite-resistance protein TehA | - |
| JRZ87_RS10915 (JRZ87_10910) | 2373481..2374173 | + | 693 | WP_223303748.1 | expansin EXLX1 family cellulose-binding protein | - |
| JRZ87_RS10920 (JRZ87_10915) | 2374467..2374784 | - | 318 | WP_223303749.1 | TetR/AcrR family transcriptional regulator C-terminal domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 157 a.a. Molecular weight: 17578.95 Da Isoelectric Point: 4.7269
>T191166 WP_024105930.1 NZ_CP069599:2369371-2369841 [Dickeya dianthicola]
MILYRLTKTKYLSTVWTGYGAKEAGGRWNSVGVSMVYVSETASLTMLETLVHLHAAHILDYYTLLRIDVPDDHIQSVNMN
DLPENWAEEDAPPELAAYGDAWCFTKSSIALRVPSTLSPVEFNYLLNPEHPDFSSIIQNADTIPFQFDSRLKPAIK
MILYRLTKTKYLSTVWTGYGAKEAGGRWNSVGVSMVYVSETASLTMLETLVHLHAAHILDYYTLLRIDVPDDHIQSVNMN
DLPENWAEEDAPPELAAYGDAWCFTKSSIALRVPSTLSPVEFNYLLNPEHPDFSSIIQNADTIPFQFDSRLKPAIK
Download Length: 471 bp
>T191166 NZ_CP091652:c1937915-1937601 [Escherichia coli]
ATGCACCTGATAACTCAAAAAGCATTGAAAGATGCTGCGGAAAAATACCCGCAACATAAAACGGAGTTGGTGGCTCTGGG
GAACACGATTGCTAAGGGATATTTCAAAAAACCTGAGTCATTAAAAGCAGTATTCCCATCTCTGGATAACTTCAAATATC
TGGATAAGCATTATGTTTTCAATGTTGGGGGCAATGAATTACGTGTTGTAGCAATGGTCTTTTTTGAATCGCAAAAGTGC
TACATACGTGAAGTTATGACGCATAAAGAATACGATTTCTTTACCGCTGTTCATCGTACTAAGGGGAAAAAATGA
ATGCACCTGATAACTCAAAAAGCATTGAAAGATGCTGCGGAAAAATACCCGCAACATAAAACGGAGTTGGTGGCTCTGGG
GAACACGATTGCTAAGGGATATTTCAAAAAACCTGAGTCATTAAAAGCAGTATTCCCATCTCTGGATAACTTCAAATATC
TGGATAAGCATTATGTTTTCAATGTTGGGGGCAATGAATTACGTGTTGTAGCAATGGTCTTTTTTGAATCGCAAAAGTGC
TACATACGTGAAGTTATGACGCATAAAGAATACGATTTCTTTACCGCTGTTCATCGTACTAAGGGGAAAAAATGA
Antitoxin
Download Length: 148 a.a. Molecular weight: 16506.81 Da Isoelectric Point: 9.6195
>AT191166 WP_024105929.1 NZ_CP069599:2368931-2369374 [Dickeya dianthicola]
MKTFSLSTTQTRPPRLWQVAGLNNSDGVALLGQINEGLDGTVANVIIDWAKITQNDLRKMSGIPSTTFSRSRKARFTADQ
SERLVRIIRVIDRAVELFEGDKDEAQKWLNEPNRALSWKVPAELMASETGAYEVMKLITRLEHGAYS
MKTFSLSTTQTRPPRLWQVAGLNNSDGVALLGQINEGLDGTVANVIIDWAKITQNDLRKMSGIPSTTFSRSRKARFTADQ
SERLVRIIRVIDRAVELFEGDKDEAQKWLNEPNRALSWKVPAELMASETGAYEVMKLITRLEHGAYS
Download Length: 444 bp
>AT191166 NZ_CP091652:c1937604-1937188 [Escherichia coli]
ATGATTGCGATTGCCGACATCTTGCAAGCAGGAGAAAAGCTAACTGCTGTGGCACCTTTTCTGGCGGGTATTCAGAACGA
GGAACAATACACCCAGGCGCTGGAACTGGTAGATCATCTGCTGCTCAACGATCCTGAAAACCCCTTGCTGGATCTGGTGT
GTGCCAAAATAACCGCGTGGGAAGAATCAGCGCCCGAATTTGCGGAATTTAATGCCATGGCTCAAGCCATGCCTGGCGGT
ATAGCCGTGATTCGTACCCTTATGGATCAATATGGTTTAACCCTTTCCGATCTGCCGGAAATTGGCAGTAAATCTATGGT
GTCACGCGTTTTGAGCGGGAAGAGGAAATTAACGCTGGAACACGCTAAAAAATTGGCAACGCGATTCGGCATTTCTCCCG
CCTTGTTTATTGATTAA
ATGATTGCGATTGCCGACATCTTGCAAGCAGGAGAAAAGCTAACTGCTGTGGCACCTTTTCTGGCGGGTATTCAGAACGA
GGAACAATACACCCAGGCGCTGGAACTGGTAGATCATCTGCTGCTCAACGATCCTGAAAACCCCTTGCTGGATCTGGTGT
GTGCCAAAATAACCGCGTGGGAAGAATCAGCGCCCGAATTTGCGGAATTTAATGCCATGGCTCAAGCCATGCCTGGCGGT
ATAGCCGTGATTCGTACCCTTATGGATCAATATGGTTTAACCCTTTCCGATCTGCCGGAAATTGGCAGTAAATCTATGGT
GTCACGCGTTTTGAGCGGGAAGAGGAAATTAACGCTGGAACACGCTAAAAAATTGGCAACGCGATTCGGCATTTCTCCCG
CCTTGTTTATTGATTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|