Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2266679..2266761 | Replicon | chromosome |
| Accession | NZ_CP069599 | ||
| Organism | Dickeya dianthicola strain 16MB01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2266681..2266761 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2266679..2266761 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JRZ87_RS10400 (JRZ87_10395) | 2262119..2262343 | - | 225 | WP_024105836.1 | hypothetical protein | - |
| JRZ87_RS10405 (JRZ87_10400) | 2262680..2263081 | + | 402 | WP_024105837.1 | hypothetical protein | - |
| JRZ87_RS22495 | 2263234..2263362 | + | 129 | WP_029729479.1 | hypothetical protein | - |
| JRZ87_RS10410 (JRZ87_10405) | 2263627..2264232 | + | 606 | WP_024105838.1 | hypothetical protein | - |
| JRZ87_RS10415 (JRZ87_10410) | 2264372..2264605 | + | 234 | WP_024105839.1 | hypothetical protein | - |
| JRZ87_RS10420 (JRZ87_10415) | 2264829..2264987 | - | 159 | WP_162928372.1 | hypothetical protein | - |
| JRZ87_RS10425 (JRZ87_10420) | 2265495..2266001 | + | 507 | WP_144414575.1 | hypothetical protein | - |
| - | 2266679..2266761 | + | 83 | - | - | Antitoxin |
| - | 2266681..2266761 | - | 81 | - | - | Toxin |
| JRZ87_RS10430 (JRZ87_10425) | 2266931..2267269 | - | 339 | WP_024105843.1 | YebY family protein | - |
| JRZ87_RS10435 (JRZ87_10430) | 2267743..2268159 | + | 417 | WP_046830401.1 | hypothetical protein | - |
| JRZ87_RS10440 (JRZ87_10435) | 2268491..2268739 | + | 249 | WP_024105845.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| JRZ87_RS10445 (JRZ87_10440) | 2269001..2270275 | - | 1275 | WP_024105846.1 | YeaH/YhbH family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 81 bp
>T191158 NZ_CP069599:c2266761-2266681 [Dickeya dianthicola]
AATGCCAACTTTTAGCGCACGGCTCTCTCCAAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
AATGCCAACTTTTAGCGCACGGCTCTCTCCAAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
Antitoxin
Download Length: 83 bp
>AT191158 NZ_CP069599:2266679-2266761 [Dickeya dianthicola]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTTGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTTGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT
