Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3087815..3088086 | Replicon | chromosome |
| Accession | NZ_CP069571 | ||
| Organism | Escherichia coli strain FDAARGOS_1250 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3087945..3088048 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3087815..3088086 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6J80_RS15280 | 3084371..3085033 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| I6J80_RS15285 | 3085057..3085713 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| I6J80_RS15290 | 3085815..3086045 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6J80_RS15295 | 3086184..3086558 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6J80_RS15300 | 3086562..3087434 | + | 873 | WP_000879294.1 | copper homeostasis membrane protein CopD | - |
| I6J80_RS15305 | 3087447..3087788 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3087815..3088086 | - | 272 | - | - | Antitoxin |
| - | 3087945..3088048 | + | 104 | - | - | Toxin |
| I6J80_RS15310 | 3088183..3088839 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| I6J80_RS15315 | 3088840..3089031 | - | 192 | WP_001296140.1 | YebW family protein | - |
| I6J80_RS15320 | 3089136..3089372 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| I6J80_RS15325 | 3089490..3090929 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T190970 NZ_CP069571:3087945-3088048 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT190970 NZ_CP069571:c3088086-3087815 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
