Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 792694..792962 | Replicon | chromosome |
| Accession | NZ_CP069549 | ||
| Organism | Escherichia coli strain FDAARGOS_1253 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 792822..792924 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 792694..792962 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6J83_RS03610 | 789248..789910 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| I6J83_RS03615 | 789933..790589 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| I6J83_RS03620 | 790691..790921 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6J83_RS03625 | 791060..791434 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6J83_RS03630 | 791438..792310 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| I6J83_RS03635 | 792323..792664 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 792694..792962 | - | 269 | - | - | Antitoxin |
| - | 792822..792924 | + | 103 | - | - | Toxin |
| I6J83_RS03640 | 793059..793715 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| I6J83_RS03645 | 793716..793907 | - | 192 | WP_001296140.1 | YebW family protein | - |
| I6J83_RS03650 | 794012..794248 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| I6J83_RS03655 | 794366..795805 | - | 1440 | WP_001313925.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T190868 NZ_CP069549:792822-792924 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT190868 NZ_CP069549:c792962-792694 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
