Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 4646257..4647089 | Replicon | chromosome |
| Accession | NZ_CP069542 | ||
| Organism | Escherichia coli strain FDAARGOS_1248 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | S1PD64 |
| Locus tag | I6J78_RS22330 | Protein ID | WP_000854753.1 |
| Coordinates | 4646257..4646631 (-) | Length | 125 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | - |
| Locus tag | I6J78_RS22335 | Protein ID | WP_204148142.1 |
| Coordinates | 4646721..4647089 (-) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6J78_RS22290 | 4641289..4642062 | + | 774 | WP_000157137.1 | type IV toxin-antitoxin system AbiEi family antitoxin | - |
| I6J78_RS22295 | 4642055..4642972 | + | 918 | WP_000361917.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| I6J78_RS22300 | 4643266..4643433 | + | 168 | WP_001356018.1 | hypothetical protein | - |
| I6J78_RS22305 | 4643486..4644148 | - | 663 | WP_000357928.1 | hypothetical protein | - |
| I6J78_RS22310 | 4644152..4644862 | - | 711 | WP_001219054.1 | integrase arm-type DNA-binding domain-containing protein | - |
| I6J78_RS22315 | 4645326..4645478 | - | 153 | WP_001280445.1 | hypothetical protein | - |
| I6J78_RS22320 | 4645563..4645760 | - | 198 | WP_000839281.1 | DUF957 domain-containing protein | - |
| I6J78_RS22325 | 4645772..4646260 | - | 489 | WP_000777547.1 | hypothetical protein | - |
| I6J78_RS22330 | 4646257..4646631 | - | 375 | WP_000854753.1 | TA system toxin CbtA family protein | Toxin |
| I6J78_RS22335 | 4646721..4647089 | - | 369 | WP_204148142.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| I6J78_RS22340 | 4647252..4647473 | - | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| I6J78_RS22345 | 4647560..4648036 | - | 477 | WP_001186725.1 | RadC family protein | - |
| I6J78_RS22350 | 4648052..4648537 | - | 486 | WP_000849588.1 | antirestriction protein | - |
| I6J78_RS22355 | 4648592..4649413 | - | 822 | WP_001234562.1 | DUF945 domain-containing protein | - |
| I6J78_RS22360 | 4649494..4649705 | + | 212 | Protein_4354 | hypothetical protein | - |
| I6J78_RS22365 | 4649826..4650281 | - | 456 | WP_000581498.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 125 a.a. Molecular weight: 14005.00 Da Isoelectric Point: 8.2905
>T190863 WP_000854753.1 NZ_CP069542:c4646631-4646257 [Escherichia coli]
MKTLPDTHVREASSCPSPVTIWQTLLSRLLGQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
STCPRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKHPEKR
MKTLPDTHVREASSCPSPVTIWQTLLSRLLGQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
STCPRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKHPEKR
Download Length: 375 bp
>T190863 NZ_CP091563:3715145-3715672 [Salmonella enterica]
ATGATGTTTACAGACTGGCATGAGGCCGCGATAGGGAAAACCCACAATCGAATGAATTTTGATTGTGGGGATGCCGATCT
GAACCAATTCCTGCAACGCCATGCACGACAAAATCATGAGAAAGGGACAACGAAAACCTATGTTGCGCTTGATAATTCGG
ATGTTACACGTATCCACGGCTTTTACTCAGTCAGTCCTGCATCACTGATATATGCACAGGTTCCCGGCGCAATCAGCAAA
GGATTAGGGAGATACGATGTGCCGGTGTTTCGTCTGGGTCGTTTAGCCGTAGACAAATCTATGCAGGGGCAAGGGCTGGG
AGCACAACTTTTGTTATCTGCCGGAAAGCGTTGCATACAGGCGGCTTTGCAGGTCGGTGGCGTAGCCCTACTTATTGATG
CCAAAAATAAACAGGTCTGCGACTGGTACAAAGGATTTGGCGCAGTACCATTAAACGATCAACCCCTTTCCTTGTTGCTG
TCGTTTAAAACGCTTTATGCTGCTTTATCTGCATCTGGTAGGTTATGA
ATGATGTTTACAGACTGGCATGAGGCCGCGATAGGGAAAACCCACAATCGAATGAATTTTGATTGTGGGGATGCCGATCT
GAACCAATTCCTGCAACGCCATGCACGACAAAATCATGAGAAAGGGACAACGAAAACCTATGTTGCGCTTGATAATTCGG
ATGTTACACGTATCCACGGCTTTTACTCAGTCAGTCCTGCATCACTGATATATGCACAGGTTCCCGGCGCAATCAGCAAA
GGATTAGGGAGATACGATGTGCCGGTGTTTCGTCTGGGTCGTTTAGCCGTAGACAAATCTATGCAGGGGCAAGGGCTGGG
AGCACAACTTTTGTTATCTGCCGGAAAGCGTTGCATACAGGCGGCTTTGCAGGTCGGTGGCGTAGCCCTACTTATTGATG
CCAAAAATAAACAGGTCTGCGACTGGTACAAAGGATTTGGCGCAGTACCATTAAACGATCAACCCCTTTCCTTGTTGCTG
TCGTTTAAAACGCTTTATGCTGCTTTATCTGCATCTGGTAGGTTATGA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13490.24 Da Isoelectric Point: 6.2050
>AT190863 WP_204148142.1 NZ_CP069542:c4647089-4646721 [Escherichia coli]
VLDTLSGTTHPDDNDDHPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCKADTLGSGGYVYLAVYSTPETKK
VLDTLSGTTHPDDNDDHPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCKADTLGSGGYVYLAVYSTPETKK
Download Length: 369 bp
>AT190863 NZ_CP091563:3714858-3715148 [Salmonella enterica]
ATGAAAACCATGCCTCAGATAGCTATAGAATCTAACGAAAGGCTGTCGTTACGTGTATCGACGGATGCCAAAAAGTTGAT
AGTCCGCGCTGCGGCAATCCAGCAAACCAACCTGACGGATTTTGTGGTCAGTAACATACTACCTGTCGCACAGAAGATTG
TTGATGCCGCCGAACGGGTATATCTGACGGAGCGCGATACTAAAATGATCATGGAAATTTTAGATAACCCGCCAGCGCCG
AATGAAAAGCTTCTTGCCGCTGCTTTCGCCCTGCCGGACATGAAGAAATGA
ATGAAAACCATGCCTCAGATAGCTATAGAATCTAACGAAAGGCTGTCGTTACGTGTATCGACGGATGCCAAAAAGTTGAT
AGTCCGCGCTGCGGCAATCCAGCAAACCAACCTGACGGATTTTGTGGTCAGTAACATACTACCTGTCGCACAGAAGATTG
TTGATGCCGCCGAACGGGTATATCTGACGGAGCGCGATACTAAAATGATCATGGAAATTTTAGATAACCCGCCAGCGCCG
AATGAAAAGCTTCTTGCCGCTGCTTTCGCCCTGCCGGACATGAAGAAATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|