Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2527117..2527388 | Replicon | chromosome |
| Accession | NZ_CP069542 | ||
| Organism | Escherichia coli strain FDAARGOS_1248 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2527247..2527350 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2527117..2527388 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6J78_RS11875 | 2523672..2524334 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| I6J78_RS11880 | 2524358..2525014 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| I6J78_RS11885 | 2525116..2525346 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6J78_RS11890 | 2525485..2525859 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| I6J78_RS11895 | 2525863..2526735 | + | 873 | WP_000879286.1 | copper homeostasis membrane protein CopD | - |
| I6J78_RS11900 | 2526748..2527089 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2527117..2527388 | - | 272 | - | - | Antitoxin |
| - | 2527247..2527350 | + | 104 | - | - | Toxin |
| I6J78_RS11905 | 2527485..2528141 | + | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| I6J78_RS11910 | 2528142..2528333 | - | 192 | WP_001313035.1 | YebW family protein | - |
| I6J78_RS11915 | 2528438..2528674 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| I6J78_RS11920 | 2528792..2530231 | - | 1440 | WP_024176540.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T190846 NZ_CP069542:2527247-2527350 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT190846 NZ_CP069542:c2527388-2527117 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
