Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2076818..2077086 | Replicon | chromosome |
| Accession | NZ_CP069528 | ||
| Organism | Escherichia coli strain FDAARGOS_1252 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2076856..2076958 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2076818..2077086 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6J82_RS09875 | 2073974..2075413 | + | 1440 | WP_024186841.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6J82_RS09880 | 2075532..2075768 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| I6J82_RS09885 | 2075873..2076064 | + | 192 | WP_024186842.1 | YebW family protein | - |
| I6J82_RS09890 | 2076065..2076721 | - | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| - | 2076818..2077086 | + | 269 | - | - | Antitoxin |
| - | 2076856..2076958 | - | 103 | - | - | Toxin |
| I6J82_RS09895 | 2077116..2077457 | - | 342 | WP_000984819.1 | YebY family protein | - |
| I6J82_RS09900 | 2077470..2078342 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| I6J82_RS09905 | 2078346..2078720 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6J82_RS09910 | 2078859..2079089 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6J82_RS09915 | 2079191..2079847 | + | 657 | WP_096972765.1 | carbon-nitrogen hydrolase family protein | - |
| I6J82_RS09920 | 2079871..2080533 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2059538..2160987 | 101449 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T190797 NZ_CP069528:c2076958-2076856 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT190797 NZ_CP069528:2076818-2077086 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
