Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1441481..1441749 | Replicon | chromosome |
| Accession | NZ_CP069517 | ||
| Organism | Escherichia coli strain FDAARGOS_1262 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1441519..1441621 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1441481..1441749 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6J92_RS07105 | 1438638..1440077 | + | 1440 | WP_001467894.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6J92_RS07110 | 1440195..1440431 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| I6J92_RS07115 | 1440536..1440727 | + | 192 | WP_001296140.1 | YebW family protein | - |
| I6J92_RS07120 | 1440728..1441384 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 1441481..1441749 | + | 269 | - | - | Antitoxin |
| - | 1441519..1441621 | - | 103 | - | - | Toxin |
| I6J92_RS07125 | 1441779..1442120 | - | 342 | WP_000977376.1 | YebY family protein | - |
| I6J92_RS07130 | 1442133..1443005 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| I6J92_RS07135 | 1443009..1443383 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6J92_RS07140 | 1443522..1443752 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6J92_RS07145 | 1443854..1444510 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| I6J92_RS07150 | 1444533..1445195 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T190736 NZ_CP069517:c1441621-1441519 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT190736 NZ_CP069517:1441481-1441749 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
