Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2014751..2015022 | Replicon | chromosome |
| Accession | NZ_CP069501 | ||
| Organism | Escherichia coli strain FDAARGOS_1268 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2014882..2014984 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2014751..2015022 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6J98_RS09595 | 2011306..2011968 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| I6J98_RS09600 | 2011992..2012648 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| I6J98_RS09605 | 2012750..2012980 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6J98_RS09610 | 2013119..2013493 | + | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| I6J98_RS09615 | 2013497..2014369 | + | 873 | WP_000879323.1 | copper homeostasis membrane protein CopD | - |
| I6J98_RS09620 | 2014382..2014723 | + | 342 | WP_000976484.1 | YebY family protein | - |
| - | 2014751..2015022 | - | 272 | - | - | Antitoxin |
| - | 2014882..2014984 | + | 103 | - | - | Toxin |
| I6J98_RS09625 | 2015119..2015775 | + | 657 | WP_000812752.1 | protein-serine/threonine phosphatase | - |
| I6J98_RS09630 | 2015776..2015967 | - | 192 | WP_001296140.1 | YebW family protein | - |
| I6J98_RS09635 | 2016072..2016308 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| I6J98_RS09640 | 2016426..2017865 | - | 1440 | WP_204088926.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T190698 NZ_CP069501:2014882-2014984 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT190698 NZ_CP069501:c2015022-2014751 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
