Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1770887..1771155 | Replicon | chromosome |
| Accession | NZ_CP069488 | ||
| Organism | Escherichia coli strain FDAARGOS_1264 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1771015..1771117 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1770887..1771155 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6J94_RS08475 | 1767440..1768102 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| I6J94_RS08480 | 1768126..1768782 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| I6J94_RS08485 | 1768884..1769114 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6J94_RS08490 | 1769253..1769627 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6J94_RS08495 | 1769631..1770503 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| I6J94_RS08500 | 1770516..1770857 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1770887..1771155 | - | 269 | - | - | Antitoxin |
| - | 1771015..1771117 | + | 103 | - | - | Toxin |
| I6J94_RS08505 | 1771252..1771908 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| I6J94_RS08510 | 1771909..1772100 | - | 192 | WP_001296140.1 | YebW family protein | - |
| I6J94_RS08515 | 1772205..1772441 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| I6J94_RS08520 | 1772558..1773997 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T190629 NZ_CP069488:1771015-1771117 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT190629 NZ_CP069488:c1771155-1770887 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
