Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 544458..544729 | Replicon | chromosome |
| Accession | NZ_CP069459 | ||
| Organism | Escherichia coli strain FDAARGOS_1249 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 544588..544691 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 544458..544729 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6J79_RS02550 | 541013..541675 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| I6J79_RS02555 | 541699..542355 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| I6J79_RS02560 | 542457..542687 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6J79_RS02565 | 542826..543200 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6J79_RS02570 | 543204..544076 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| I6J79_RS02575 | 544089..544430 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 544458..544729 | - | 272 | - | - | Antitoxin |
| - | 544588..544691 | + | 104 | - | - | Toxin |
| I6J79_RS02580 | 544826..545482 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| I6J79_RS02585 | 545483..545674 | - | 192 | WP_000457842.1 | YebW family protein | - |
| I6J79_RS02590 | 545779..546015 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| I6J79_RS02595 | 546133..547572 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T190528 NZ_CP069459:544588-544691 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT190528 NZ_CP069459:c544729-544458 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
