Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4202335..4202603 | Replicon | chromosome |
| Accession | NZ_CP069453 | ||
| Organism | Escherichia coli strain FDAARGOS_1254 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4202373..4202475 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4202335..4202603 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6J84_RS20120 | 4199492..4200931 | + | 1440 | WP_001313925.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6J84_RS20125 | 4201049..4201285 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| I6J84_RS20130 | 4201390..4201581 | + | 192 | WP_001296140.1 | YebW family protein | - |
| I6J84_RS20135 | 4201582..4202238 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 4202335..4202603 | + | 269 | - | - | Antitoxin |
| - | 4202373..4202475 | - | 103 | - | - | Toxin |
| I6J84_RS20140 | 4202633..4202974 | - | 342 | WP_000976472.1 | YebY family protein | - |
| I6J84_RS20145 | 4202987..4203859 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| I6J84_RS20150 | 4203863..4204237 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6J84_RS20155 | 4204376..4204606 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6J84_RS20160 | 4204708..4205364 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| I6J84_RS20165 | 4205387..4206049 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T190513 NZ_CP069453:c4202475-4202373 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT190513 NZ_CP069453:4202335-4202603 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
