Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2885336..2885604 | Replicon | chromosome |
| Accession | NZ_CP069451 | ||
| Organism | Escherichia coli strain FDAARGOS_1256 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2885374..2885476 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2885336..2885604 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6J86_RS13845 | 2882493..2883932 | + | 1440 | WP_001298454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6J86_RS13850 | 2884050..2884286 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| I6J86_RS13855 | 2884391..2884582 | + | 192 | WP_001296140.1 | YebW family protein | - |
| I6J86_RS13860 | 2884583..2885239 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 2885336..2885604 | + | 269 | - | - | Antitoxin |
| - | 2885374..2885476 | - | 103 | - | - | Toxin |
| I6J86_RS13865 | 2885634..2885975 | - | 342 | WP_000984819.1 | YebY family protein | - |
| I6J86_RS13870 | 2885988..2886860 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| I6J86_RS13875 | 2886864..2887238 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6J86_RS13880 | 2887377..2887607 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6J86_RS13885 | 2887710..2888366 | + | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| I6J86_RS13890 | 2888390..2889052 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T190475 NZ_CP069451:c2885476-2885374 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT190475 NZ_CP069451:2885336-2885604 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
