Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2530644..2530912 | Replicon | chromosome |
| Accession | NZ_CP069447 | ||
| Organism | Escherichia coli strain FDAARGOS_1255 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2530772..2530874 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2530644..2530912 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6J85_RS11745 | 2527196..2527858 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| I6J85_RS11750 | 2527882..2528538 | - | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| I6J85_RS11755 | 2528641..2528871 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6J85_RS11760 | 2529010..2529384 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6J85_RS11765 | 2529388..2530260 | + | 873 | WP_042091150.1 | copper homeostasis membrane protein CopD | - |
| I6J85_RS11770 | 2530273..2530614 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2530644..2530912 | - | 269 | - | - | Antitoxin |
| - | 2530772..2530874 | + | 103 | - | - | Toxin |
| I6J85_RS11775 | 2531009..2531665 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| I6J85_RS11780 | 2531666..2531857 | - | 192 | WP_001317886.1 | YebW family protein | - |
| I6J85_RS11785 | 2531962..2532198 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| I6J85_RS11790 | 2532316..2533755 | - | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T190439 NZ_CP069447:2530772-2530874 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT190439 NZ_CP069447:c2530912-2530644 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
