Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1201709..1201977 | Replicon | chromosome |
| Accession | NZ_CP069445 | ||
| Organism | Escherichia coli strain FDAARGOS_1251 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1201747..1201849 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1201709..1201977 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6J81_RS06015 | 1198866..1200305 | + | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6J81_RS06020 | 1200423..1200659 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| I6J81_RS06025 | 1200764..1200955 | + | 192 | WP_001317886.1 | YebW family protein | - |
| I6J81_RS06030 | 1200956..1201612 | - | 657 | WP_000812742.1 | protein-serine/threonine phosphatase | - |
| - | 1201709..1201977 | + | 269 | - | - | Antitoxin |
| - | 1201747..1201849 | - | 103 | - | - | Toxin |
| I6J81_RS06035 | 1202007..1202348 | - | 342 | WP_000976472.1 | YebY family protein | - |
| I6J81_RS06040 | 1202361..1203233 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| I6J81_RS06045 | 1203237..1203611 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6J81_RS06050 | 1203750..1203980 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6J81_RS06055 | 1204082..1204738 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| I6J81_RS06060 | 1204761..1205423 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T190407 NZ_CP069445:c1201849-1201747 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT190407 NZ_CP069445:1201709-1201977 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCTAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCTAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
