Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 554160..554431 | Replicon | chromosome |
| Accession | NZ_CP069386 | ||
| Organism | Escherichia coli strain XH1815 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 554198..554301 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 554160..554431 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JSW75_RS02755 | 551317..552756 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JSW75_RS02760 | 552874..553110 | + | 237 | WP_001295499.1 | YebV family protein | - |
| JSW75_RS02765 | 553215..553406 | + | 192 | WP_000457842.1 | YebW family protein | - |
| JSW75_RS02770 | 553407..554063 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 554160..554431 | + | 272 | - | - | Antitoxin |
| - | 554198..554301 | - | 104 | - | - | Toxin |
| JSW75_RS02775 | 554459..554800 | - | 342 | WP_000976476.1 | YebY family protein | - |
| JSW75_RS02780 | 554813..555685 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| JSW75_RS02785 | 555689..556063 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JSW75_RS02790 | 556202..556432 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JSW75_RS02795 | 556534..557190 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JSW75_RS02800 | 557214..557876 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T190296 NZ_CP069386:c554301-554198 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT190296 NZ_CP069386:554160-554431 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
