Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relE-yefM/YoeB-YefM |
Location | 5281452..5281957 | Replicon | chromosome |
Accession | NZ_CP069352 | ||
Organism | Pseudomonas granadensis isolate CT364 |
Toxin (Protein)
Gene name | relE | Uniprot ID | - |
Locus tag | JN757_RS23020 | Protein ID | WP_203419411.1 |
Coordinates | 5281703..5281957 (+) | Length | 85 a.a. |
Antitoxin (Protein)
Gene name | yefM | Uniprot ID | - |
Locus tag | JN757_RS23015 | Protein ID | WP_203419410.1 |
Coordinates | 5281452..5281706 (+) | Length | 85 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
JN757_RS22985 | 5276615..5276875 | - | 261 | WP_203419406.1 | hypothetical protein | - |
JN757_RS22990 | 5277046..5277375 | + | 330 | WP_203419407.1 | hypothetical protein | - |
JN757_RS22995 | 5277394..5277762 | - | 369 | WP_090286060.1 | PH domain-containing protein | - |
JN757_RS23000 | 5277955..5278311 | + | 357 | WP_203422136.1 | hypothetical protein | - |
JN757_RS23005 | 5278428..5279231 | + | 804 | WP_203419408.1 | hypothetical protein | - |
JN757_RS23010 | 5279304..5281223 | + | 1920 | WP_203419409.1 | alkaline phosphatase family protein | - |
JN757_RS23015 | 5281452..5281706 | + | 255 | WP_203419410.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | Antitoxin |
JN757_RS23020 | 5281703..5281957 | + | 255 | WP_203419411.1 | Txe/YoeB family addiction module toxin | Toxin |
JN757_RS23025 | 5281951..5283138 | - | 1188 | WP_203419412.1 | aspartate aminotransferase family protein | - |
JN757_RS23030 | 5283240..5284169 | + | 930 | WP_203419413.1 | LysR family transcriptional regulator | - |
JN757_RS23035 | 5284301..5285002 | + | 702 | WP_203419414.1 | hypothetical protein | - |
JN757_RS23040 | 5285258..5285749 | - | 492 | WP_090286073.1 | RidA family protein | - |
JN757_RS23045 | 5286061..5286948 | - | 888 | WP_090286075.1 | heme o synthase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 85 a.a. Molecular weight: 9955.58 Da Isoelectric Point: 9.0629
>T190251 WP_203419411.1 NZ_CP069352:5281703-5281957 [Pseudomonas granadensis]
MKIQFTPTGWEDYLWFQQNDKAGLKRINLLIKAIKREPFEGVGKPEALKHNMSGLWSRRITAEHRLVYMIEDGEVCVISC
RYHY
MKIQFTPTGWEDYLWFQQNDKAGLKRINLLIKAIKREPFEGVGKPEALKHNMSGLWSRRITAEHRLVYMIEDGEVCVISC
RYHY
Download Length: 255 bp
>T190251 NZ_CP091198:1764331-1764600 [Enterococcus faecalis]
ATGTCCTATCGATTAGAATTTACTCCTGATGTAAAAAAACAGTTAAAAAAAATGGATAAATATCAAGCGACATTGCTAAC
AAGATGGTTGTATCGAAATATTGATGGAACGGCCAATCCTAGAGAGCATGGAAAAGCTTTATCAGCAAATCGTGCAGGTC
AGTGGCGATATAGGATAGGGAATTATCGTGTCATTGTAGAAATAGAAGATGAACGTCTTGTTGTTACAGCCATTCAGGTT
GGCCACAGAAGAAATGTTTACGACAAATAA
ATGTCCTATCGATTAGAATTTACTCCTGATGTAAAAAAACAGTTAAAAAAAATGGATAAATATCAAGCGACATTGCTAAC
AAGATGGTTGTATCGAAATATTGATGGAACGGCCAATCCTAGAGAGCATGGAAAAGCTTTATCAGCAAATCGTGCAGGTC
AGTGGCGATATAGGATAGGGAATTATCGTGTCATTGTAGAAATAGAAGATGAACGTCTTGTTGTTACAGCCATTCAGGTT
GGCCACAGAAGAAATGTTTACGACAAATAA
Antitoxin
Download Length: 85 a.a. Molecular weight: 9534.93 Da Isoelectric Point: 7.0125
>AT190251 WP_203419410.1 NZ_CP069352:5281452-5281706 [Pseudomonas granadensis]
MQTINYTTARAHLAETMDRVNEDRAPLLVTRQKGEPVVMMSLSDYNALEETAYLLRSPANAERLMKSINELRAGKAKARQ
LIEE
MQTINYTTARAHLAETMDRVNEDRAPLLVTRQKGEPVVMMSLSDYNALEETAYLLRSPANAERLMKSINELRAGKAKARQ
LIEE
Download Length: 255 bp
>AT190251 NZ_CP091198:1764110-1764331 [Enterococcus faecalis]
ATGATTACTGTAAGAGTGAGTGATGAAGAAAAAGAATGGCTTTCTTACATGGCAGAATTTTTCGGTGTGACGTTGTCGGA
TTTGTTAAAAAGCTATTCAATGGAACAATTAGAAGATGAGTACGATAAACAAACAGCAGAAATTGCTCACAAACGATGGA
TTGAGCAAGGAAAAGAAACAATTTCTATGGACGAAATATTAAATGAGTTTGGTGGATTATAA
ATGATTACTGTAAGAGTGAGTGATGAAGAAAAAGAATGGCTTTCTTACATGGCAGAATTTTTCGGTGTGACGTTGTCGGA
TTTGTTAAAAAGCTATTCAATGGAACAATTAGAAGATGAGTACGATAAACAAACAGCAGAAATTGCTCACAAACGATGGA
TTGAGCAAGGAAAAGAAACAATTTCTATGGACGAAATATTAAATGAGTTTGGTGGATTATAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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