Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2718664..2718895 | Replicon | chromosome |
| Accession | NZ_CP069159 | ||
| Organism | Citrobacter sp. R56 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2718666..2718769 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2718664..2718895 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JM656_RS12905 | 2713983..2715095 | + | 1113 | WP_203358138.1 | oligosaccharide repeat unit polymerase | - |
| JM656_RS12910 | 2715109..2715522 | - | 414 | WP_203358139.1 | hypothetical protein | - |
| JM656_RS12915 | 2716266..2716742 | - | 477 | WP_203358140.1 | hypothetical protein | - |
| JM656_RS12920 | 2716804..2717934 | - | 1131 | WP_203358141.1 | hypothetical protein | - |
| JM656_RS12925 | 2718289..2718588 | + | 300 | WP_203358142.1 | tyrosine-type recombinase/integrase | - |
| - | 2718664..2718895 | + | 232 | - | - | Antitoxin |
| - | 2718666..2718769 | - | 104 | - | - | Toxin |
| JM656_RS12930 | 2718925..2719263 | - | 339 | WP_203358143.1 | YebY family protein | - |
| JM656_RS12935 | 2719280..2720152 | - | 873 | WP_203358144.1 | copper homeostasis membrane protein CopD | - |
| JM656_RS12940 | 2720155..2720529 | - | 375 | WP_203358145.1 | CopC domain-containing protein YobA | - |
| JM656_RS12945 | 2720667..2720897 | + | 231 | WP_162383786.1 | DNA polymerase III subunit theta | - |
| JM656_RS12950 | 2721004..2721660 | + | 657 | WP_203358146.1 | carbon-nitrogen hydrolase family protein | - |
| JM656_RS12955 | 2721683..2722345 | + | 663 | WP_203358147.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2712298..2724402 | 12104 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T189996 NZ_CP069159:c2718769-2718666 [Citrobacter sp. R56]
GGCAGGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 232 bp
>AT189996 NZ_CP069159:2718664-2718895 [Citrobacter sp. R56]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCCTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGTGGCTAAAGTGGCTGG
AAAAAAAGGATGCTTGTCACCCGCTACAACGTAAAAACCGCAAGTTCTTCTGCGAGAAACTTGCGGTTTTTT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCCTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGTGGCTAAAGTGGCTGG
AAAAAAAGGATGCTTGTCACCCGCTACAACGTAAAAACCGCAAGTTCTTCTGCGAGAAACTTGCGGTTTTTT
