Detailed information of TA system TA189529

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/AbrB(antitoxin)
• Location: 702697..703343
• Replicon: chromosome
• Accession: NZ_CP069073
• Organism: Mycobacterium tuberculosis strain N0054

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: G0TQ88
• Locus tag: JN140_RS03180
• Protein ID: WP_003403137.1
• Coordinates: 702697..703110 (-)
• Length: 138 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: G0TQ89
• Locus tag: JN140_RS03185
• Protein ID: WP_003403139.1
• Coordinates: 703107..703343 (-)
• Length: 79 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
JN140_RS03160	698780..700330	+	1551	WP_003403119.1	MlaD family protein	-
JN140_RS03165	700382..700774	-	393	WP_003403122.1	type II toxin-antitoxin system toxin ribonuclease C4	-
JN140_RS03170	700771..701028	-	258	WP_003403125.1	type II toxin-antitoxin system antitoxin VapB4	-
JN140_RS03175	701211..702446	-	1236	WP_003403128.1	ATP-binding protein	-
JN140_RS03180	702697..703110	-	414	WP_003403137.1	type II toxin-antitoxin system VapC family toxin	Toxin
JN140_RS03185	703107..703343	-	237	WP_003403139.1	type II toxin-antitoxin system antitoxin VapB27	Antitoxin
JN140_RS03190	703447..703953	-	507	WP_003900973.1	two component system sensor kinase HK1	-
JN140_RS03195	704067..704597	-	531	WP_003917320.1	two component system sensor kinase HK2	-
JN140_RS03200	704581..705276	-	696	WP_003918099.1	two-component system response regulator TcrA	-
JN140_RS03205	705399..705710	+	312	WP_003403164.1	hypothetical protein	-
JN140_RS03210	705782..706732	+	951	WP_003900184.1	DUF1259 domain-containing protein	-
JN140_RS03215	706973..707557	+	585	WP_003403171.1	IS607-like element IS1536 family transposase	-
JN140_RS03220	707559..708269	+	711	Protein_638	IS607 family element RNA-guided endonuclease TnpB	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (7-126)

Antitoxin

• SpoVT-AbrB domain (3-43)

Sequences

Toxin

Protein

• Length: 138 a.a.
• Molecular weight: 14786.14 Da
• Isoelectric Point: 8.1405

>T189529 WP_003403137.1 NZ_CP069073:c703110-702697 [Mycobacterium tuberculosis]
VKPPLAVDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPMDAARLLTERFAAPLLLSSR
TTEHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDARAKDTYEKIGVHVVVAA

Nucleotide

• Length: 414 bp

>T189529 NZ_CP090837:c2857172-2856804 [Streptomyces sp. R527F]
ATGCAGTACCTGACCCTGCCCGAGCTGCTGAACCTGACGGAGCGGCTCGGCACGCCGGAGGTACGCGACTACGGGCTGCT
GGAATCCGCGCTGGCCCGGCCACAGGCGAGCGTGTTCGGCCAGGACGCCTATCCGGATGTCTGGCAGAAGGCCGCGGCCC
TCATGGAGTCCCTAGCCCGGAACCACGGGCTCGTGGACGGCAACAAGCGGATCGCGTGGTACGCGACCTGGGTGTTCCTC
CACATGAACGGCCATCAGCTCGACGCCGGCTTCGACGTCGACGAAGCGGAGCGGTTCGTGCCGGCGGTGTGCCAGGGCGC
TCTGGACATGCCCAAGATCGCCGAACAGTTGCCGGAGTTCGCTCGGTAG

Antitoxin

Protein

• Length: 79 a.a.
• Molecular weight: 8212.41 Da
• Isoelectric Point: 5.0351

>AT189529 WP_003403139.1 NZ_CP069073:c703343-703107 [Mycobacterium tuberculosis]
MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATGETTIDDEVVFGLIDSGRK

Nucleotide

• Length: 237 bp

>AT189529 NZ_CP090837:c2857369-2857172 [Streptomyces sp. R527F]
ATGGCTGGTCTGAATCTGCGGTTCACCGAGGAAGAGCTGGACTCCCTGCGCGCCCGCGCCGAGGCGGAGGGGAGGAGCAT
GCAGGCGTTCGCCCACGATGCGGTGATCACTGCCGTAAACGAGCACTCCCGGCTCTTCGACGAGGCCGCGGACCACGTGC
TGAAGGTCAGTGAGGAGCTCAACCGGAGGCTTGCCTGA

Structures

Toxin

• AlphaFold DB: G0TQ88

Antitoxin

• AlphaFold DB: G0TQ89