Detailed information of TA system TA189422

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/PIN(toxin)
• Location: 1385534..1386222
• Replicon: chromosome
• Accession: NZ_CP069071
• Organism: Mycobacterium tuberculosis strain N0136

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: G0THR7
• Locus tag: JN142_RS06615
• Protein ID: WP_003406304.1
• Coordinates: 1385791..1386222 (+)
• Length: 144 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: G0THR6
• Locus tag: JN142_RS06610
• Protein ID: WP_003406302.1
• Coordinates: 1385534..1385794 (+)
• Length: 87 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
JN142_RS06590	1381111..1381935	+	825	WP_003900298.1	trehalose ABC transporter permease SugB	-
JN142_RS06595	1381940..1383121	+	1182	WP_003406299.1	trehalose ABC transporter ATP-binding protein SugC	-
JN142_RS06600	1383198..1384298	-	1101	WP_003406300.1	magnesium/cobalt transporter CorA	-
JN142_RS06605	1384469..1385458	+	990	WP_003406301.1	malate dehydrogenase	-
JN142_RS06610	1385534..1385794	+	261	WP_003406302.1	type II toxin-antitoxin system antitoxin VapB33	Antitoxin
JN142_RS06615	1385791..1386222	+	432	WP_003406304.1	type II toxin-antitoxin system VapC family toxin	Toxin
JN142_RS06620	1386245..1387932	-	1688	Protein_1307	PE family protein	-
JN142_RS06625	1388112..1388972	+	861	WP_003900301.1	glycine betaine ABC transporter substrate-binding protein	-
JN142_RS06630	1389053..1389883	-	831	WP_003898788.1	SDR family NAD(P)-dependent oxidoreductase	-
JN142_RS06635	1389940..1390233	-	294	WP_003898789.1	type II toxin-antitoxin system mRNA interferase RelE	-
JN142_RS06640	1390230..1390499	-	270	WP_003406322.1	type II toxin-antitoxin system Phd/YefM family antitoxin	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain toxin (2-142)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 144 a.a.
• Molecular weight: 15873.08 Da
• Isoelectric Point: 5.8838

>T189422 WP_003406304.1 NZ_CP069071:1385791-1386222 [Mycobacterium tuberculosis]
VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLPTADAIAYVREWLSQPNVD
LLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEIHSSDTDFARFADLKWTDPLRE

Nucleotide

• Length: 432 bp

>T189422 NZ_CP090764:c877469-877170 [Burkholderia cenocepacia]
ATGGACAAGATCAAGACGCGGCCGTGGGATTCGGCCGAACACCTGAAAACCGAAGACGACATGGCCGACTACTTCGACGC
ATGCCTGCAGGAGGCCGGCGACGATCCGGCCTTCATCGCGCATGCGCTCGGCGTGATCGCTCGTGCACGCGGCATGTCGC
AGGTCGCACGCGATGCGGGCCTGTCGCGCGAAGGGCTGTACAAGGCGCTGTCGCACGACGGCAATCCGAGCTTCGGCACG
ATCCTGAAAGTCATCAAGGCGCTCGGCCTGCAATTGCACGCCGCCAAGGCTGCCGCGTGA

Antitoxin

Protein

• Length: 87 a.a.
• Molecular weight: 9918.25 Da
• Isoelectric Point: 6.4755

>AT189422 WP_003406302.1 NZ_CP069071:1385534-1385794 [Mycobacterium tuberculosis]
MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQEQYRLEPHESAVRSGLDLAGFNKLADELEDEALLD
ATRRAR

Nucleotide

• Length: 261 bp

>AT189422 NZ_CP090764:c877811-877473 [Burkholderia cenocepacia]
ATGGTTTACACATTGCAATGCATGCCCTACAGTCCTCCTGCATTCGGCATCCGGACCACCGACGTCTTCGACGCCTGGTT
TGCCGGCCTGCCCGATCGCCTCGCCAAACGCCGCATCCAGGCGCGCATCGACCGCCTGTCGATGGGCAATCCGGGCGACT
GGAAATCCGCCGGCTCCCCCGTCGTCGAAATGCGTATCGACCACGGCCCGGGCTATCGCGTCTATGACGTGAGGCGCGGA
ACGATATGGGTCATCCTGCTGTGCGGCGGAGATCAATCGACGCAACAGGCCGACATCCGCGCCGCGCACGCAATGCTCGC
GTACCTCGACATGGAGTGA

Structures

Toxin

• AlphaFold DB: G0THR7

Antitoxin

• AlphaFold DB: G0THR6