Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-RHH
Location 2880860..2881569 Replicon chromosome
Accession NZ_CP069069
Organism Mycobacterium tuberculosis strain N1176

Toxin (Protein)


Gene name vapC Uniprot ID G0TQ26
Locus tag JN144_RS13535 Protein ID WP_003413164.1
Coordinates 2880860..2881273 (+) Length 138 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID A0A7U8Y8P4
Locus tag JN144_RS13540 Protein ID WP_003909690.1
Coordinates 2881312..2881569 (+) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JN144_RS13505 2876570..2876884 + 315 WP_009937839.1 hypothetical protein -
JN144_RS13510 2877180..2878391 + 1212 WP_003900845.1 alpha/beta hydrolase family protein -
JN144_RS13515 2878518..2879177 + 660 WP_003900846.1 LppA family lipoprotein -
JN144_RS13520 2879174..2879833 + 660 WP_003900847.1 LppA family lipoprotein -
JN144_RS13525 2879830..2880492 + 663 WP_003900848.1 LppA family lipoprotein -
JN144_RS13530 2880489..2880767 + 279 WP_003901422.1 type II toxin-antitoxin system VapB family antitoxin -
JN144_RS13535 2880860..2881273 + 414 WP_003413164.1 PIN domain nuclease Toxin
JN144_RS13540 2881312..2881569 + 258 WP_003909690.1 CopG family transcriptional regulator Antitoxin
JN144_RS13545 2881566..2881943 + 378 WP_003413174.1 type II toxin-antitoxin system VapC family toxin -
JN144_RS13550 2881959..2882333 - 375 WP_003413177.1 hypothetical protein -
JN144_RS13555 2882433..2882828 - 396 WP_003413180.1 type II toxin-antitoxin system toxin 23S rRNA-specific endonuclease VapC20 -
JN144_RS13560 2882825..2883070 - 246 WP_003413183.1 type II toxin-antitoxin system antitoxin VapB20 -
JN144_RS13565 2883481..2883900 - 420 WP_003413190.1 A24 family peptidase -
JN144_RS13570 2883912..2884721 - 810 WP_003413193.1 shikimate dehydrogenase -
JN144_RS13575 2884718..2885971 - 1254 WP_003413196.1 endolytic transglycosylase MltG -
JN144_RS13580 2885964..2886476 - 513 WP_003413197.1 Holliday junction resolvase RuvX -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(4-122)

Antitoxin

Ribbon-helix-helix protein, CopG

(2-38)


Sequences

Toxin        


Download         Length: 138 a.a.        Molecular weight: 15045.00 Da        Isoelectric Point: 5.4673

>T189321 WP_003413164.1 NZ_CP069069:2880860-2881273 [Mycobacterium tuberculosis]
MVFCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDGLARIPVGAETFTRACQVQRE
LAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVAAITGQPTEWIVPRGTL

Download         Length: 414 bp

>T189321 NZ_CP090732:c872082-871501 [Burkholderia cepacia]
ATGAACCCCGATACGATCCACGCGCGGCTCGCGTTCCTGCGCGAAGCCGAACGCCTGAAGGATGTGCTGCGCAGCGGCCA
CACGTCGGCCGGGCGCGCGGAAAGCACCGCCGAGCATAGCTGGCGGCTGTGCCTGATGGCACTCGTATTCGCCGATGCGC
TGCCCGGCATCGACACGCTGAAGCTGCTGAAGCTGTGTGTCGTCCACGATCTCGGCGAGGCGCTGCACGGCGACATCCCC
GCGATCGAGCAGGCCGCGCACCCCGACAAGAGCGCGCACGAACGCGACGACCTGCTGACGCTGACCGCGCCGCTCGATCC
GGCGCAGCGCGACGAGATCGTCGCACTGTGGGATGAATACGAAGCGGCCGCGTCGCCGGAAGCGCGCGCGGCAAAAGCGT
TCGACAAGCTGGAGACGATCCTGCAGCACACCCAGGGCCGCAATCCGCCCGGTTTCGACTACGCGTTCAATCTCGGCTAC
GGCCGCCGCTATACCGACGCCGCACCGCTGTTCAGCGCGATCCGCGACATCGTCGACGCCGACACGCAACGCCGGATCGA
CGCGAGCGGGCAGCACGCGTAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9511.67 Da        Isoelectric Point: 10.2895

>AT189321 WP_003909690.1 NZ_CP069069:2881312-2881569 [Mycobacterium tuberculosis]
MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRDSWRGRDFTGTEYVDAIRGDLNERLA
RLGLA

Download         Length: 258 bp

>AT189321 NZ_CP090732:c872722-872165 [Burkholderia cepacia]
ATGTCTGCCTCACCGCTACACACGCCGCCACTCGGCCCGCAACTCAAGCGCTGGCGTGCGCTGCACCGCGTGAAACAGAG
CCACGCGGCGGAACTGTTCGGCGTGGCGCAGTCGACGATCTCACGCTGGGAAGCCGGCCTGCAACAGATGTCGCCCGGCG
AACGCGCGACGGCCGAACGGCTGCTCGCCGCACGCCTCGATTCCGCGGGCGATCACGCGCTTGCGCGGCTCGTCGCGGGC
AGCGCGGGCCGCATGCATCTCGTGTGCGACCTCACGCACCGCCTGCTCGCCTGTTCGCCTGCGCGTGCAGCCGAATTCTC
GCAACCGCTGTCGATGCTGCTCGGCACGTCGCTGTGGCGCTATGCGACGCCGGAAATCGTCCGCATGGAAACCGCGCTCG
ATACGCTCGGCTGGCATGATCGCGCCGGGCCGCCGAGCGTCGAATTCGACACCGGCGCGAATGCGTCGCGCGTCGTGCCG
ATCCGCGGCAGCCTGTGCCGGTGGACACGGATGACGTTGTCGGACGGGTCGGCCGCGCGGCTCGTGGAAACGCTGTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB G0TQ26

Antitoxin

Source ID Structure
AlphaFold DB A0A7U8Y8P4

References