Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/LOTUS_5_Limkain_b1-PHD
Location 721488..722152 Replicon chromosome
Accession NZ_CP069067
Organism Mycobacterium tuberculosis strain N1268

Toxin (Protein)


Gene name vapC Uniprot ID P96917
Locus tag JN146_RS03320 Protein ID WP_003403246.1
Coordinates 721745..722152 (+) Length 136 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WF18
Locus tag JN146_RS03315 Protein ID WP_003403244.1
Coordinates 721488..721748 (+) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JN146_RS03290 717665..718822 + 1158 WP_003903091.1 hypothetical protein -
JN146_RS03295 718833..719780 + 948 WP_003403232.1 DUF732 domain-containing protein -
JN146_RS03300 719873..720127 + 255 WP_003403235.1 type II toxin-antitoxin system antitoxin VapB30 -
JN146_RS03305 720127..720522 + 396 WP_003403236.1 type II toxin-antitoxin system toxin ribonuclease C30 -
JN146_RS03310 720616..721356 - 741 WP_003403239.1 TVP38/TMEM64 family protein -
JN146_RS03315 721488..721748 + 261 WP_003403244.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
JN146_RS03320 721745..722152 + 408 WP_003403246.1 type II toxin-antitoxin system VapC family toxin Toxin
JN146_RS03325 722224..723375 - 1152 WP_003403248.1 FIST N-terminal domain-containing protein -
JN146_RS03330 723468..725195 - 1728 WP_003900979.1 exodeoxyribonuclease V subunit alpha -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(9-125)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-57)


Sequences

Toxin        


Download         Length: 136 a.a.        Molecular weight: 14376.37 Da        Isoelectric Point: 4.3568

>T189167 WP_003403246.1 NZ_CP069067:721745-722152 [Mycobacterium tuberculosis]
VSTTPAAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVADMETLPVDDDAAR
MWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALDGAASVEIIRV

Download         Length: 408 bp

>T189167 NZ_CP090680:c2076544-2076293 [Burkholderia multivorans]
GTGCTGCGGCTCTATCGCTTCCTCGCGCCCAAGGATGCCAATGCGGCGCAACGCGCGGTGCAGGCTATCCGGGCCGGGGT
CAAGATTCTGGCCCATCAGCCACGCATCGGCCGCCCGGTCGAGGACATGGAACCCGAGTTTCGGGAATGGCTGATCGACT
TCGGCAACGGCGGCTATGTCGCCCTCTATCGCTTCGACGGGGAGAACATCGCCATTCTTGCCGTTCGGCACCAGAAAGAA
GCGGGGTATTGA

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9492.84 Da        Isoelectric Point: 11.9108

>AT189167 WP_003403244.1 NZ_CP069067:721488-721748 [Mycobacterium tuberculosis]
MSEVASRELRNDTAGVLRRVRAGEDVTITVSGRPVAVLTPVRPRRRRWLSKTEFLSRLRGAQADPGLRNDLAVLAGDTTE
DLGPIR

Download         Length: 261 bp

>AT189167 NZ_CP090680:c2076849-2076571 [Burkholderia multivorans]
ATGGCAACGGCAACATCCATCAAGCTCGATGACGAGCTGAAAGGGCGCGTCCAGCACCTGGCCGAAGCCCGCCGGCGTAC
GTCGCACTGGATCATGCGAGAAGCCATCGCGCAGTACGTCGAGCGCGAGGAAAAGCGCGAGGCGTTCAAACAGGATGCGC
TCCGGGCCTGGGAGGACTATCAGCGCACCGGCCAGCATCTGACACTTGAGGAAGCCGACGCCTGGCTGGCGAAGCTGGAA
GCCGGCGAGGATGCAGAGTTGCCTAAGTGTCACGTCTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 3DBO

Antitoxin

Source ID Structure
PDB 3DBO
AlphaFold DB A0A7U4BSE4

References