Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 680668..681287 Replicon chromosome
Accession NZ_CP069063
Organism Mycobacterium tuberculosis strain N3913

Toxin (Protein)


Gene name vapC Uniprot ID O53779
Locus tag JN150_RS03065 Protein ID WP_003403047.1
Coordinates 680880..681287 (+) Length 136 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID O53778
Locus tag JN150_RS03060 Protein ID WP_003403039.1
Coordinates 680668..680883 (+) Length 72 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JN150_RS03050 679196..679954 + 759 WP_003898511.1 Mut7-C RNAse domain-containing protein -
JN150_RS03055 680083..680574 - 492 WP_003403017.1 mycobacterial cell wall protein Rv0580c -
JN150_RS03060 680668..680883 + 216 WP_003403039.1 type II toxin-antitoxin system antitoxin VapB26 Antitoxin
JN150_RS03065 680880..681287 + 408 WP_003403047.1 type II toxin-antitoxin system toxin ribonuclease C26 Toxin
JN150_RS03070 681347..682033 - 687 WP_003403052.1 LpqN/LpqT family lipoprotein -
JN150_RS03075 682187..684820 + 2634 WP_003403055.1 GH92 family glycosyl hydrolase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(1-120)

Antitoxin

Ribbon-helix-helix protein, CopG

(4-39)


Sequences

Toxin        


Download         Length: 136 a.a.        Molecular weight: 14471.43 Da        Isoelectric Point: 4.4493

>T188927 WP_003403047.1 NZ_CP069063:680880-681287 [Mycobacterium tuberculosis]
VIIDTSALLAYFDAAEPDHAAVSECIDSSADALVVSPYVVAELDYLVATRVGVDAELAVLRELAGGAWELANCGAAEIEQ
AARIVTKYQDQRIGIADAANVVLADRYRTRTILTLDRRHFSALRPIGGGRFTVIP

Download         Length: 408 bp

>T188927 NZ_CP090593:3769147-3769452 [Pectobacterium aroidearum]
ATGCAATTCATTGTTTATGAATATAAACGCGCCAGCCACTACAAAATGTTTGTCGATGTGCAAAGCGATATTGTCGACAC
ACCAAAGCGGCGCATGGTCATCCCGCTTATCGAAGCACATCACCTGTCTGAGAAAGTGAATAAGACGTTGTTCCCTCTGA
TCCGCATCGATGGCGAAGATTATCGGCTGATGACAACTGAACTATCGAGCGTTCCCGTTGAAGTCATTGGTGAGGCTATC
GCGGATCTTGGCGACTACGCGGATGAGGTCAAAGATGCTATTAATCTGATGTTTTGGGGGATTTGA

Antitoxin


Download         Length: 72 a.a.        Molecular weight: 7572.66 Da        Isoelectric Point: 10.5454

>AT188927 WP_003403039.1 NZ_CP069063:680668-680883 [Mycobacterium tuberculosis]
VDKTTVYLPDELKAAVKRAARQRGVSEAQVIRESIRAAVGGAKPPPRGGLYAGSEPIARRVDELLAGFGER

Download         Length: 216 bp

>AT188927 NZ_CP090593:3768926-3769144 [Pectobacterium aroidearum]
ATGAAACACCGCGTCAGCGTTACCGTGGACAAAGACAGTTATCAGGTTCTGAGTGCTGCCGGAGTCAATATTTCCGGGCT
GGTGAACGATGCCATTGGCAAAGAAGCCCGCCGTATCAAGGCTGAAGAATGGAAGAAGGAAAACCGCGAAGGGATGGAAG
AAGTCGCCCGATTTATCGCACAACATGGCTCCTTTGCGGATGAAAACAGGAACTGGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 5X3T

Antitoxin

Source ID Structure
PDB 5X3T
AlphaFold DB A0A7U4BSA2

References