188877

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 758737..759425 Replicon chromosome
Accession NZ_CP069062
Organism Mycobacterium tuberculosis strain N0069

Toxin (Protein)


Gene name vapC Uniprot ID P9WFB2
Locus tag JN151_RS03490 Protein ID WP_003403386.1
Coordinates 758737..759174 (-) Length 146 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID O06777
Locus tag JN151_RS03495 Protein ID WP_003911263.1
Coordinates 759171..759425 (-) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JN151_RS03460 754988..755998 + 1011 WP_031653722.1 ABC transporter ATP-binding protein -
JN151_RS03465 756386..756769 - 384 WP_003403365.1 ribonuclease VapC6 -
JN151_RS03470 756864..757019 - 156 WP_003403368.1 type II toxin-antitoxin system VapB family antitoxin -
JN151_RS03475 757095..757811 - 717 WP_003903122.1 CPBP family intramembrane metalloprotease -
JN151_RS03480 758087..758395 - 309 WP_003403376.1 type II toxin-antitoxin system PemK/MazF family toxin -
JN151_RS03485 758382..758627 - 246 WP_003403381.1 ribbon-helix-helix protein, CopG family -
JN151_RS03490 758737..759174 - 438 WP_003403386.1 type II toxin-antitoxin system VapC family toxin Toxin
JN151_RS03495 759171..759425 - 255 WP_003911263.1 antitoxin VapB7 Antitoxin
JN151_RS03500 759539..761902 + 2364 WP_003403397.1 arylsulfatase AtsD -
JN151_RS03505 761965..762291 + 327 WP_003403401.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
JN151_RS03510 762203..762541 + 339 WP_003403405.1 PIN domain-containing protein -
JN151_RS03515 762538..762711 + 174 WP_003898549.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-126)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 146 a.a.        Molecular weight: 15245.39 Da        Isoelectric Point: 5.1865

>T188877 WP_003403386.1 NZ_CP069062:c759174-758737 [Mycobacterium tuberculosis]
MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDAAALGRVTMPNCSRRYSPSIE
ATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSADPAFADLSDVVHVIPDAAGMVSLLGDR

Download         Length: 438 bp

>T188877 NZ_CP090589:4217323-4218252 [Pectobacterium aroidearum]
ATGGATCATCGTGATATTTATGCCCGACAGGTCAAGCTGTTAATGACCGCCCTGCCGTATGTGGCGAAAGAACCCTGTTT
CGCACTGAAAGGCGGCACCGCAATTAATTTATTTGTGCAGGATTTTCCTCGTCTATCGGTAGATATCGATCTGGTTTATC
AAACCTTCATAGATCGTGATACAGACCTAATCGCTATTGACGATGCATTGATGCGTATTACGGAATCGCTGAATGGCAGA
CAGGGGCTCACAGCGATCCAGCAGGAGAATAAAGCCGATGAAAAACGCATCATCGTTAATACCGCTGATGCGCAGATAAA
GATTGAAGTCAGCCCGGTCTGGCGTGGACTGCTGTTGCCCCCAGCAGAAATGCCGGTATGTGAGCAGGTGGAAATGGAAT
ACGGCTTCACCACCATGAGCGTTGTCTCTCTGGCAGATCTTTACGGCGGCAAAATCTGCGCTGCGCTTGACCGCCAGCAT
CCGCGCGATCTGTTTGATGTACTGAATATGCTAGAAAAACCGTGCCTAACGCGTGAGATTTTTGATGGTTTTCTTTGCTA
TCTGGCAGGACATCCTCGCCCTATTGCCGAACTACTGGCACCGAATTGGGACACATCGCGGATCGCCACACTATACGCCC
AGGAATTTTCAGGCATGACGCAGCAGGAAACCTCACTGGAATCGCTGTTATCTGTAGCGACTCTACTGCCGCAGGCGTTG
AAATCTCATTTCACCGCTCAGGACCGGCAATTCTTACTCAGCTATAAGCAAAACAACCCTGACTGGTCGCTGTATCGCTA
TCCTGATATTCAACATCTTCCCGCCATTCGCTGGAAACAGCGGAATTTATCGGCTTTACATGCTAAAAATCCGGCCAAAT
TTAGCGCGGCAGTAGGTAAGCTTGAGAAGGTTCTGGAACAACATTTTTAG

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9450.99 Da        Isoelectric Point: 11.7073

>AT188877 WP_003911263.1 NZ_CP069062:c759425-759171 [Mycobacterium tuberculosis]
MSMRLAHRLQILLDDECHRRITAVARERGVPVATVVREAIDRGLVSPAGRRKSAGRRLLDAADMSVPEPRELKQELEALR
ARRG

Download         Length: 255 bp

>AT188877 NZ_CP090589:4216554-4217336 [Pectobacterium aroidearum]
TTGACAAATTATCTAAACTGGCTGATGCAAAACACCCTGCCCGGTCAGGTGTTGCTACAGTCATGGCTTACCCGCAACGG
CATAGACCGTAAGCTCTCTTACGTCTATGTCCAAAACGGTTGGCTCAGGCGGATCGCTCACGGCGTTTACTGCCGGACGG
GTCGTGAACCAGACTGGGTGGATGCGGTTTACTGCCTGCAAACTCAATGGGAGAAACCTGTGCGGGTAGCAGGGCTGACC
AGCCTTGCGCTACAGGGCTATTCCCATTATACCGAACTGGGTAAACCTCAAATTTGGCTCACGCTCCCGGCTTACATAAA
GCTGCCGGGATGGTTCACCGCCTTTAAACCATCCGCCACCTTTGTCGTGCTCTATACATCAGGCCTGTCGGTTGATGTGA
TGCCACTCACGACAGAACTGAGAATCGGCGATCGGCGGCTGACTGGCAGCATGCCAGAACTTGCCGCATATGAAATCGCC
AGCGGCGTTCCCGCACAAATATCGTTTGAGCATGCAGATGCATTGTTTCAGGGGCTGAACCTTCTCAGTCCGCGTAAATT
ACAGGCACTGCTCTATGCCAGCCATTCGGTAAAAACCAACAGGGTGATGCTCTACCTTGCCCAGCGCAATGGACATCCTT
ATTTTCAGTATCTCGATAAAAGTGGTATAGAAACAGGCGCTGGAAAGCGGCAAATTGTCCCCGGTGGCTGGCTGGAACCG
GATTACCAGATCACGGTTCCCAGGGAGTTTAAATCGGAAGGAGTCGAAGATGGATCATCGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U4BSW5

Antitoxin

Source ID Structure
AlphaFold DB A0A806JQG1

References