Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2175807..2175952 | Replicon | chromosome |
| Accession | NZ_CP069046 | ||
| Organism | Klebsiella pneumoniae strain 33Kpn22 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2175843..2175945 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2175807..2175952 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IFY68_RS10615 | 2170937..2172997 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| IFY68_RS10620 | 2173001..2173660 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| IFY68_RS10625 | 2173739..2173969 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| IFY68_RS10630 | 2174082..2174456 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| IFY68_RS10635 | 2174460..2175329 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| IFY68_RS10640 | 2175346..2175684 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2175807..2175952 | - | 146 | - | - | Antitoxin |
| - | 2175843..2175945 | + | 103 | - | - | Toxin |
| IFY68_RS10645 | 2176320..2176463 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| IFY68_RS10650 | 2176568..2177536 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| IFY68_RS10655 | 2177693..2178346 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| IFY68_RS10660 | 2178343..2178534 | - | 192 | WP_002911395.1 | YebW family protein | - |
| IFY68_RS10665 | 2178632..2178871 | - | 240 | WP_002911393.1 | YebV family protein | - |
| IFY68_RS10670 | 2178987..2180420 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T188839 NZ_CP069046:2175843-2175945 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT188839 NZ_CP069046:c2175952-2175807 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
