Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/RelE-RelB |
| Location | 22373..22934 | Replicon | plasmid P1 |
| Accession | NZ_CP068999 | ||
| Organism | Sulfitobacter mediterraneus strain SC7-37 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | JNX02_RS18055 | Protein ID | WP_203199970.1 |
| Coordinates | 22659..22934 (+) | Length | 92 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | JNX02_RS18050 | Protein ID | WP_203199969.1 |
| Coordinates | 22373..22672 (+) | Length | 100 a.a. |
Genomic Context
Location: 17649..18233 (585 bp)
Type: Others
Protein ID: WP_203199964.1
Type: Others
Protein ID: WP_203199964.1
Location: 18417..18806 (390 bp)
Type: Others
Protein ID: WP_203199965.1
Type: Others
Protein ID: WP_203199965.1
Location: 18964..20946 (1983 bp)
Type: Others
Protein ID: WP_203199966.1
Type: Others
Protein ID: WP_203199966.1
Location: 21021..21614 (594 bp)
Type: Others
Protein ID: WP_203199967.1
Type: Others
Protein ID: WP_203199967.1
Location: 21614..22270 (657 bp)
Type: Others
Protein ID: WP_203199968.1
Type: Others
Protein ID: WP_203199968.1
Location: 22373..22672 (300 bp)
Type: Antitoxin
Protein ID: WP_203199969.1
Type: Antitoxin
Protein ID: WP_203199969.1
Location: 22659..22934 (276 bp)
Type: Toxin
Protein ID: WP_203199970.1
Type: Toxin
Protein ID: WP_203199970.1
Location: 23042..27304 (4263 bp)
Type: Others
Protein ID: WP_203199971.1
Type: Others
Protein ID: WP_203199971.1
Location: 27426..27812 (387 bp)
Type: Others
Protein ID: WP_043872253.1
Type: Others
Protein ID: WP_043872253.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNX02_RS18025 | 17649..18233 | + | 585 | WP_203199964.1 | YdeI/OmpD-associated family protein | - |
| JNX02_RS18030 | 18417..18806 | + | 390 | WP_203199965.1 | DUF3768 domain-containing protein | - |
| JNX02_RS18035 | 18964..20946 | + | 1983 | WP_203199966.1 | ParB/RepB/Spo0J family partition protein | - |
| JNX02_RS18040 | 21021..21614 | + | 594 | WP_203199967.1 | regulator | - |
| JNX02_RS18045 | 21614..22270 | + | 657 | WP_203199968.1 | hypothetical protein | - |
| JNX02_RS18050 | 22373..22672 | + | 300 | WP_203199969.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
| JNX02_RS18055 | 22659..22934 | + | 276 | WP_203199970.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| JNX02_RS18060 | 23042..27304 | + | 4263 | WP_203199971.1 | strawberry notch family protein | - |
| JNX02_RS18065 | 27426..27812 | + | 387 | WP_043872253.1 | hypothetical protein | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Non-Mobilizable plasmid | - | - | 1..102150 | 102150 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 92 a.a. Molecular weight: 10379.91 Da Isoelectric Point: 4.4217
>T188832 WP_203199970.1 NZ_CP068999:22659-22934 [Sulfitobacter mediterraneus]
MPNLEWKATAIADLLAIIDYISDDNPDAAQVLKDEIEQKTSLLPERPQMYRAGRVDGTREMVVRPNYIVVYAESPEMVTI
LRVLHAAQQWP
MPNLEWKATAIADLLAIIDYISDDNPDAAQVLKDEIEQKTSLLPERPQMYRAGRVDGTREMVVRPNYIVVYAESPEMVTI
LRVLHAAQQWP
Download Length: 276 bp
>T188832 NZ_CP090575:793149-793511 [Staphylococcus epidermidis]
ATGATTAGAAGAGGAGATGTTTATTTAGCGGATTTATCACCAGTTCAAGGGTCTGAACAAGGGGGAGTAAGACCTGTAGT
TATCATTCAAAATGATACTGGTAATAAATATAGTCCAACTGTAATTGTAGCTGCGATTACTGGTAGGATTAATAAAGCGA
AAATACCAACCCACGTAGAAATTGAAAAGAAAAAGTATAAATTAGACAAAGATTCAGTTATTCTTCTTGAACAAATTAGA
ACACTAGATAAAAAGCGTTTAAAAGAAAAATTAACATTTTTATCAGAGAGTAAAATGATAGAGGTTGATAATGCCTTAGA
TATTAGTTTGGGATTAAATAACTTTGATCATCATAAATCTTAA
ATGATTAGAAGAGGAGATGTTTATTTAGCGGATTTATCACCAGTTCAAGGGTCTGAACAAGGGGGAGTAAGACCTGTAGT
TATCATTCAAAATGATACTGGTAATAAATATAGTCCAACTGTAATTGTAGCTGCGATTACTGGTAGGATTAATAAAGCGA
AAATACCAACCCACGTAGAAATTGAAAAGAAAAAGTATAAATTAGACAAAGATTCAGTTATTCTTCTTGAACAAATTAGA
ACACTAGATAAAAAGCGTTTAAAAGAAAAATTAACATTTTTATCAGAGAGTAAAATGATAGAGGTTGATAATGCCTTAGA
TATTAGTTTGGGATTAAATAACTTTGATCATCATAAATCTTAA
Antitoxin
Download Length: 100 a.a. Molecular weight: 10478.91 Da Isoelectric Point: 5.6448
>AT188832 WP_203199969.1 NZ_CP068999:22373-22672 [Sulfitobacter mediterraneus]
MPAQTSMLHVRVDDQLKAQASDALAGVGLTLSDAVRILLTRVAAEGGLPAGLTADPDAYDAWFRAKVQEALDDPRPTTPH
SKAMQDAQALIDGKRLAKS
MPAQTSMLHVRVDDQLKAQASDALAGVGLTLSDAVRILLTRVAAEGGLPAGLTADPDAYDAWFRAKVQEALDDPRPTTPH
SKAMQDAQALIDGKRLAKS
Download Length: 300 bp
>AT188832 NZ_CP090575:792982-793152 [Staphylococcus epidermidis]
ATGTTATCTTTTAATCAAAATAGAAACCACAGTCTTGAACAATCTTTAAAAGAAGGTTATGCACAAATGGCCGATTTAAA
CCTCTCCCTAGCAACAGAAGCTTTCCCGATAGAGTGTGAAGCTTGTGATTGCAATGAATCACATTTAATATCTAATTCAA
AGAATGAATGA
ATGTTATCTTTTAATCAAAATAGAAACCACAGTCTTGAACAATCTTTAAAAGAAGGTTATGCACAAATGGCCGATTTAAA
CCTCTCCCTAGCAACAGAAGCTTTCCCGATAGAGTGTGAAGCTTGTGATTGCAATGAATCACATTTAATATCTAATTCAA
AGAATGAATGA