Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2280466..2280737 | Replicon | chromosome |
| Accession | NZ_CP068829 | ||
| Organism | Escherichia coli strain RIVM_C030453 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2280596..2280699 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2280466..2280737 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN50_RS11010 | 2277021..2277683 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JNN50_RS11015 | 2277707..2278363 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| JNN50_RS11020 | 2278465..2278695 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JNN50_RS11025 | 2278834..2279208 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JNN50_RS11030 | 2279212..2280084 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| JNN50_RS11035 | 2280097..2280438 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2280466..2280737 | - | 272 | - | - | Antitoxin |
| - | 2280596..2280699 | + | 104 | - | - | Toxin |
| JNN50_RS11040 | 2280834..2281490 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| JNN50_RS11045 | 2281491..2281682 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JNN50_RS11050 | 2281787..2282023 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JNN50_RS11055 | 2282141..2283580 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T188737 NZ_CP068829:2280596-2280699 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT188737 NZ_CP068829:c2280737-2280466 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
