Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2239219..2239490 | Replicon | chromosome |
| Accession | NZ_CP068828 | ||
| Organism | Escherichia coli strain RIVM_C030443 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2239349..2239452 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2239219..2239490 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN35_RS10625 | 2235774..2236436 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JNN35_RS10630 | 2236460..2237116 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| JNN35_RS10635 | 2237218..2237448 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JNN35_RS10640 | 2237587..2237961 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| JNN35_RS10645 | 2237965..2238837 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| JNN35_RS10650 | 2238850..2239191 | + | 342 | WP_000976481.1 | YebY family protein | - |
| - | 2239219..2239490 | - | 272 | - | - | Antitoxin |
| - | 2239349..2239452 | + | 104 | - | - | Toxin |
| JNN35_RS10655 | 2239587..2240243 | + | 657 | WP_001546849.1 | protein-serine/threonine phosphatase | - |
| JNN35_RS10660 | 2240244..2240435 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JNN35_RS10665 | 2240540..2240776 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JNN35_RS10670 | 2240894..2242333 | - | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2215432..2256040 | 40608 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T188711 NZ_CP068828:2239349-2239452 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT188711 NZ_CP068828:c2239490-2239219 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
