Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2715997..2716268 | Replicon | chromosome |
| Accession | NZ_CP068825 | ||
| Organism | Escherichia coli strain RIVM_C030256 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2716035..2716138 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2715997..2716268 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN79_RS13130 | 2713154..2714593 | + | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JNN79_RS13135 | 2714711..2714947 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JNN79_RS13140 | 2715052..2715243 | + | 192 | WP_001296140.1 | YebW family protein | - |
| JNN79_RS13145 | 2715244..2715900 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 2715997..2716268 | + | 272 | - | - | Antitoxin |
| - | 2716035..2716138 | - | 104 | - | - | Toxin |
| JNN79_RS13150 | 2716296..2716637 | - | 342 | WP_000976481.1 | YebY family protein | - |
| JNN79_RS13155 | 2716650..2717522 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| JNN79_RS13160 | 2717526..2717900 | - | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| JNN79_RS13165 | 2718039..2718269 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JNN79_RS13170 | 2718371..2719027 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| JNN79_RS13175 | 2719051..2719713 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2700158..2725441 | 25283 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T188625 NZ_CP068825:c2716138-2716035 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT188625 NZ_CP068825:2715997-2716268 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
