Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2235562..2235833 | Replicon | chromosome |
| Accession | NZ_CP068824 | ||
| Organism | Escherichia coli strain RIVM_C030197 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2235692..2235795 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2235562..2235833 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN63_RS10660 | 2232117..2232779 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JNN63_RS10665 | 2232803..2233459 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| JNN63_RS10670 | 2233561..2233791 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JNN63_RS10675 | 2233930..2234304 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JNN63_RS10680 | 2234308..2235180 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| JNN63_RS10685 | 2235193..2235534 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2235562..2235833 | - | 272 | - | - | Antitoxin |
| - | 2235692..2235795 | + | 104 | - | - | Toxin |
| JNN63_RS10690 | 2235930..2236586 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| JNN63_RS10695 | 2236587..2236778 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JNN63_RS10700 | 2236883..2237119 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JNN63_RS10705 | 2237237..2238676 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T188584 NZ_CP068824:2235692-2235795 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT188584 NZ_CP068824:c2235833-2235562 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
