Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | mazEF/PRK09907-MazE |
Location | 1123945..1124528 | Replicon | chromosome |
Accession | NZ_CP068824 | ||
Organism | Escherichia coli strain RIVM_C030197 |
Toxin (Protein)
Gene name | mazF | Uniprot ID | S1EZP4 |
Locus tag | JNN63_RS05360 | Protein ID | WP_000254738.1 |
Coordinates | 1124193..1124528 (+) | Length | 112 a.a. |
Antitoxin (Protein)
Gene name | mazE | Uniprot ID | S1P3W5 |
Locus tag | JNN63_RS05355 | Protein ID | WP_000581937.1 |
Coordinates | 1123945..1124193 (+) | Length | 83 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
JNN63_RS05345 | 1120284..1121585 | + | 1302 | WP_001551563.1 | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | - |
JNN63_RS05350 | 1121633..1123867 | + | 2235 | WP_001551562.1 | GTP diphosphokinase | - |
JNN63_RS05355 | 1123945..1124193 | + | 249 | WP_000581937.1 | type II toxin-antitoxin system antitoxin MazE | Antitoxin |
JNN63_RS05360 | 1124193..1124528 | + | 336 | WP_000254738.1 | endoribonuclease MazF | Toxin |
JNN63_RS05365 | 1124600..1125391 | + | 792 | WP_001071643.1 | nucleoside triphosphate pyrophosphohydrolase | - |
JNN63_RS05370 | 1125619..1127256 | + | 1638 | WP_000210878.1 | CTP synthase (glutamine hydrolyzing) | - |
JNN63_RS05375 | 1127344..1128642 | + | 1299 | WP_000036723.1 | phosphopyruvate hydratase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 112 a.a. Molecular weight: 12098.04 Da Isoelectric Point: 8.2618
>T188582 WP_000254738.1 NZ_CP068824:1124193-1124528 [Escherichia coli]
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKS
IAWRARGATKKGTVAPEELQLIKAKINVLIG
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKS
IAWRARGATKKGTVAPEELQLIKAKINVLIG
Download Length: 336 bp
>T188582 NZ_CP090508:c2084255-2083974 [Xylella fastidiosa subsp. morus]
ATGCGGAGGATTAGCCAGACTGGCCAATTCAAGCGCGACTACAAGCGCGAAGCTAAGGGCCAGCATCGCGCCACGCTTGA
TGAGGAACTAATACACGTCGTAGAAGCCTTGGCCTGTGATCATCCGTTGGAGCCACGCCACCACGATCACGCACTGACTG
GCGGCTGGAAAGATCACCGTGATTGCCACATCAAACCCGATTTGGTACTGATATACCGGAAGCCCGACAACGAGACATTG
CAGCTCGTGCGCATTGGCTCACACAGCGAACTAGGCTTGTGA
ATGCGGAGGATTAGCCAGACTGGCCAATTCAAGCGCGACTACAAGCGCGAAGCTAAGGGCCAGCATCGCGCCACGCTTGA
TGAGGAACTAATACACGTCGTAGAAGCCTTGGCCTGTGATCATCCGTTGGAGCCACGCCACCACGATCACGCACTGACTG
GCGGCTGGAAAGATCACCGTGATTGCCACATCAAACCCGATTTGGTACTGATATACCGGAAGCCCGACAACGAGACATTG
CAGCTCGTGCGCATTGGCTCACACAGCGAACTAGGCTTGTGA
Antitoxin
Download Length: 83 a.a. Molecular weight: 9355.74 Da Isoelectric Point: 4.4665
>AT188582 WP_000581937.1 NZ_CP068824:1123945-1124193 [Escherichia coli]
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKE
VW
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKE
VW
Download Length: 249 bp
>AT188582 NZ_CP090508:c2084505-2084242 [Xylella fastidiosa subsp. morus]
ATGTCTGCAAACGCAGTTGTCCGTGCCCGCGTTGACACGCACATCAAAGAAGAAGCATCAACCGTGCTGGCGACGATGGG
CCTAAGCGTGTCTGATGCGTTCCGTATGATGCTGACCCGCATTGCTCGTGAGAAAGCACTACCGTTCGAGCCGCTGGTGC
CGAACGAAACTACCATCGCAGCCATGCGTGAAGCCCGTGCTGGTCACCTCAAGAGCTTTGATAGTATTGAGGCGCTCATG
GCGGACTTGCATGCGGAGGATTAG
ATGTCTGCAAACGCAGTTGTCCGTGCCCGCGTTGACACGCACATCAAAGAAGAAGCATCAACCGTGCTGGCGACGATGGG
CCTAAGCGTGTCTGATGCGTTCCGTATGATGCTGACCCGCATTGCTCGTGAGAAAGCACTACCGTTCGAGCCGCTGGTGC
CGAACGAAACTACCATCGCAGCCATGCGTGAAGCCCGTGCTGGTCACCTCAAGAGCTTTGATAGTATTGAGGCGCTCATG
GCGGACTTGCATGCGGAGGATTAG
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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