Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2794378..2794649 | Replicon | chromosome |
| Accession | NZ_CP068823 | ||
| Organism | Escherichia coli strain RIVM_C029494 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2794416..2794519 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2794378..2794649 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN66_RS13105 | 2791535..2792974 | + | 1440 | WP_077902351.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JNN66_RS13110 | 2793092..2793328 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JNN66_RS13115 | 2793433..2793624 | + | 192 | WP_001296140.1 | YebW family protein | - |
| JNN66_RS13120 | 2793625..2794281 | - | 657 | WP_000814509.1 | protein-serine/threonine phosphatase | - |
| - | 2794378..2794649 | + | 272 | - | - | Antitoxin |
| - | 2794416..2794519 | - | 104 | - | - | Toxin |
| JNN66_RS13125 | 2794677..2795018 | - | 342 | WP_000976472.1 | YebY family protein | - |
| JNN66_RS13130 | 2795031..2795903 | - | 873 | WP_075861812.1 | copper homeostasis membrane protein CopD | - |
| JNN66_RS13135 | 2795907..2796281 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JNN66_RS13140 | 2796420..2796650 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JNN66_RS13145 | 2796752..2797408 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| JNN66_RS13150 | 2797432..2798094 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T188557 NZ_CP068823:c2794519-2794416 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT188557 NZ_CP068823:2794378-2794649 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
