Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3338085..3338356 | Replicon | chromosome |
| Accession | NZ_CP068821 | ||
| Organism | Escherichia coli strain RIVM_C029952 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3338123..3338226 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3338085..3338356 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN43_RS16120 | 3335242..3336681 | + | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JNN43_RS16125 | 3336799..3337035 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JNN43_RS16130 | 3337140..3337331 | + | 192 | WP_001296140.1 | YebW family protein | - |
| JNN43_RS16135 | 3337332..3337988 | - | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| - | 3338085..3338356 | + | 272 | - | - | Antitoxin |
| - | 3338123..3338226 | - | 104 | - | - | Toxin |
| JNN43_RS16140 | 3338384..3338725 | - | 342 | WP_000976472.1 | YebY family protein | - |
| JNN43_RS16145 | 3338738..3339610 | - | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| JNN43_RS16150 | 3339614..3339988 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JNN43_RS16155 | 3340127..3340357 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JNN43_RS16160 | 3340459..3341115 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| JNN43_RS16165 | 3341139..3341801 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3337332..3345666 | 8334 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T188496 NZ_CP068821:c3338226-3338123 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT188496 NZ_CP068821:3338085-3338356 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
