Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 376013..376284 | Replicon | chromosome |
| Accession | NZ_CP068820 | ||
| Organism | Escherichia coli strain RIVM_C029951 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 376143..376246 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 376013..376284 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN41_RS02045 | 372568..373230 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JNN41_RS02050 | 373254..373910 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| JNN41_RS02055 | 374012..374242 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JNN41_RS02060 | 374381..374755 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JNN41_RS02065 | 374759..375631 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| JNN41_RS02070 | 375644..375985 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 376013..376284 | - | 272 | - | - | Antitoxin |
| - | 376143..376246 | + | 104 | - | - | Toxin |
| JNN41_RS02075 | 376381..377037 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| JNN41_RS02080 | 377038..377229 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JNN41_RS02085 | 377334..377570 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JNN41_RS02090 | 377688..379127 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 305689..392124 | 86435 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T188448 NZ_CP068820:376143-376246 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT188448 NZ_CP068820:c376284-376013 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
