Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2266893..2267164 | Replicon | chromosome |
| Accession | NZ_CP068819 | ||
| Organism | Escherichia coli strain RIVM_C029042 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2267023..2267126 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2266893..2267164 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN65_RS10985 | 2263448..2264110 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JNN65_RS10990 | 2264134..2264790 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| JNN65_RS10995 | 2264892..2265122 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JNN65_RS11000 | 2265261..2265635 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JNN65_RS11005 | 2265639..2266511 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| JNN65_RS11010 | 2266524..2266865 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2266893..2267164 | - | 272 | - | - | Antitoxin |
| - | 2267023..2267126 | + | 104 | - | - | Toxin |
| JNN65_RS11015 | 2267261..2267917 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| JNN65_RS11020 | 2267918..2268109 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JNN65_RS11025 | 2268214..2268450 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JNN65_RS11030 | 2268568..2270007 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T188425 NZ_CP068819:2267023-2267126 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT188425 NZ_CP068819:c2267164-2266893 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
