Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2222366..2222637 | Replicon | chromosome |
| Accession | NZ_CP068818 | ||
| Organism | Escherichia coli strain RIVM_C028803 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2222496..2222599 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2222366..2222637 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN48_RS10760 | 2218921..2219583 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JNN48_RS10765 | 2219607..2220263 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| JNN48_RS10770 | 2220365..2220595 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JNN48_RS10775 | 2220734..2221108 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JNN48_RS10780 | 2221112..2221984 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| JNN48_RS10785 | 2221997..2222338 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2222366..2222637 | - | 272 | - | - | Antitoxin |
| - | 2222496..2222599 | + | 104 | - | - | Toxin |
| JNN48_RS10790 | 2222734..2223390 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| JNN48_RS10795 | 2223391..2223582 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JNN48_RS10800 | 2223687..2223923 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JNN48_RS10805 | 2224041..2225480 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2213193..2238477 | 25284 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T188396 NZ_CP068818:2222496-2222599 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT188396 NZ_CP068818:c2222637-2222366 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
