Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2248269..2248537 | Replicon | chromosome |
| Accession | NZ_CP068815 | ||
| Organism | Escherichia coli strain RIVM_C028620 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2248397..2248499 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2248269..2248537 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN49_RS10410 | 2244821..2245483 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JNN49_RS10415 | 2245507..2246163 | - | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| JNN49_RS10420 | 2246266..2246496 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JNN49_RS10425 | 2246635..2247009 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JNN49_RS10430 | 2247013..2247885 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| JNN49_RS10435 | 2247898..2248239 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2248269..2248537 | - | 269 | - | - | Antitoxin |
| - | 2248397..2248499 | + | 103 | - | - | Toxin |
| JNN49_RS10440 | 2248634..2249290 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| JNN49_RS10445 | 2249291..2249482 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JNN49_RS10450 | 2249587..2249823 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JNN49_RS10455 | 2249941..2251380 | - | 1440 | WP_001298454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T188294 NZ_CP068815:2248397-2248499 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT188294 NZ_CP068815:c2248537-2248269 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
