Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) yeeUV (cbtA-cbeA)/CbtA-CbeA
Location 882905..883740 Replicon chromosome
Accession NZ_CP068813
Organism Escherichia coli strain RIVM_C029033

Toxin (Protein)


Gene name yeeV Uniprot ID A0A0A1A9A5
Locus tag JNN62_RS04185 Protein ID WP_001564063.1
Coordinates 882905..883282 (-) Length 126 a.a.

Antitoxin (Protein)


Gene name yeeU Uniprot ID A0A0K5N986
Locus tag JNN62_RS04190 Protein ID WP_021553056.1
Coordinates 883372..883740 (-) Length 123 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JNN62_RS04155 878033..879181 - 1149 WP_000905920.1 capsule polysaccharide export inner-membrane protein KpsE -
JNN62_RS04160 879253..880236 - 984 WP_001296394.1 KpsF/GutQ family sugar-phosphate isomerase -
JNN62_RS04165 881046..881216 - 171 Protein_817 IS110 family transposase -
JNN62_RS04170 881559..882401 - 843 Protein_818 DUF4942 domain-containing protein -
JNN62_RS04175 882486..882680 - 195 WP_024181941.1 DUF957 domain-containing protein -
JNN62_RS04180 882759..882908 - 150 Protein_820 hypothetical protein -
JNN62_RS04185 882905..883282 - 378 WP_001564063.1 TA system toxin CbtA family protein Toxin
JNN62_RS04190 883372..883740 - 369 WP_021553056.1 type IV toxin-antitoxin system YeeU family antitoxin Antitoxin
JNN62_RS04195 883903..884124 - 222 WP_000692345.1 DUF987 domain-containing protein -
JNN62_RS04200 884189..884665 - 477 WP_021553055.1 RadC family protein -
JNN62_RS04205 884681..885160 - 480 WP_001564060.1 antirestriction protein -
JNN62_RS04210 885426..886244 - 819 WP_001564059.1 DUF945 domain-containing protein -
JNN62_RS04215 886334..886567 - 234 WP_001278293.1 DUF905 family protein -
JNN62_RS04220 886573..887250 - 678 WP_001564058.1 hypothetical protein -
JNN62_RS04225 887401..888081 - 681 WP_001278649.1 WYL domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Integrative and Conjugative Element - gspC / gspD / gspE / gspF / gspG / gspH / gspI / gspJ / gspK / gspL / gspM / kpsM / kpsT / ugd / kpsS / kpsC / kpsU / kpsD / kpsE / kpsF / papX 765876..960920 195044
- flank IS/Tn - - 881046..881201 155


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

CbtA toxin of type IV toxin-antitoxin system

(1-112)

Antitoxin

Antitoxin CbeA

(18-117)


Sequences

Toxin        


Download         Length: 126 a.a.        Molecular weight: 14094.09 Da        Isoelectric Point: 7.8045

>T188229 WP_001564063.1 NZ_CP068813:c883282-882905 [Escherichia coli]
MKTLPDTHVREVSCCPSPVTIWQTLLTRLLDQHYSLTLNDTPFVDERVIEQHIEAGISLCDAVNFLVEKYVLVRTDQPGF
SAGASSQLINSIDILRARRATGLMTRSNYRTVNNITRGKHPEAKQ

Download         Length: 378 bp

>T188229 NZ_CP090379:c324975-324478 [Vibrio cholerae]
ATGATGAATACGGTACTTCTCGATAAAGATAAGCACGATAGGAACCGTTTCAATTGTGGCACTGAAGCACTCAACAATTA
CTTAAAAGTAATGGCGAGTCAGCAAGCCAAAAAAGACAACACCAGAACCTTCGTTTTGGAAGATGACAATAACAGTGCTT
ATATCATCGGCTTTTACACTCTGACTATGACGCCCATTGATTTGAAAGCCTTGCCCGACAAGTTACAAAAGAAGCACCAA
TCCTCAACCTCTGGAGGGCTCATTGCTCGTTTAGCTGTCGACGATAGATACAAAGGAAAAGGTTTTGGTGAGTGGCTACT
CATTGACGCTCTCAGAAAGCTACTCGCAGCCAGTGACAGTGTAGCGTTCCCTGTTGTCATTGTTGATGCCAAAGATGGTG
CAAAACATTTCTATGAGCGCTATGGGTTTCAAGCGTTTCAAGATGCCGAAAACAAACTCTTCATCACCATTGCTGATATC
AGAGCAAGCTTAGGCTAG

Antitoxin


Download         Length: 123 a.a.        Molecular weight: 13615.39 Da        Isoelectric Point: 7.0264

>AT188229 WP_021553056.1 NZ_CP068813:c883740-883372 [Escherichia coli]
VSDTLSGTTHPDDNHDHPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGNRGRFRDADAYPLDQAFPLLMKQLKLMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPETKK

Download         Length: 369 bp

>AT188229 NZ_CP090379:c325244-324972 [Vibrio cholerae]
ATGGCAACGACTTTGCCTCGCATCACCGCTAGAGTTGATGTCGATACTCAAGATTTACTCGCTAAGGCTGCTGCTCTTGC
TGGTATGTCTAGTATTAACTCATTTGTTTTGAATGCAGCAATCGAAAAAGCAAAACAAGTCATTGAACGTGAGCAAGCTC
TAAAGCTTAGCCAAGCTGATGCCGTATTGCTGATGGAAGCTCTTGATAATCCAGCTGTAGTAAATGCAAAGCTCAAATTG
GCATCCGAACGTTATGAGAGCAAAACTCAATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0A1A9A5

Antitoxin

Source ID Structure
AlphaFold DB A0A0K5N986

References