Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 703959..704230 | Replicon | chromosome |
| Accession | NZ_CP068812 | ||
| Organism | Escherichia coli strain RIVM_C029020 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 703997..704100 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 703959..704230 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN61_RS03430 | 701116..702555 | + | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JNN61_RS03435 | 702673..702909 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JNN61_RS03440 | 703014..703205 | + | 192 | WP_001296140.1 | YebW family protein | - |
| JNN61_RS03445 | 703206..703862 | - | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| - | 703959..704230 | + | 272 | - | - | Antitoxin |
| - | 703997..704100 | - | 104 | - | - | Toxin |
| JNN61_RS03450 | 704258..704599 | - | 342 | WP_000976472.1 | YebY family protein | - |
| JNN61_RS03455 | 704612..705484 | - | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| JNN61_RS03460 | 705488..705862 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JNN61_RS03465 | 706001..706231 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JNN61_RS03470 | 706333..706989 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| JNN61_RS03475 | 707013..707675 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T188196 NZ_CP068812:c704100-703997 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT188196 NZ_CP068812:703959-704230 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
