Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
Location | 2201663..2201934 | Replicon | chromosome |
Accession | NZ_CP068811 | ||
Organism | Escherichia coli strain RIVM_C028568 |
Toxin (RNA)
Gene name | SdsR | ||
Locus tag | - | ||
Coordinates | 2201793..2201896 (+) |
Antitoxin (RNA)
Gene name | RyeA | ||
Locus tag | - | ||
Coordinates | 2201663..2201934 (-) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
JNN42_RS10510 | 2198218..2198880 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
JNN42_RS10515 | 2198904..2199560 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
JNN42_RS10520 | 2199662..2199892 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
JNN42_RS10525 | 2200031..2200405 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
JNN42_RS10530 | 2200409..2201281 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
JNN42_RS10535 | 2201294..2201635 | + | 342 | WP_000976472.1 | YebY family protein | - |
- | 2201663..2201934 | - | 272 | - | - | Antitoxin |
- | 2201793..2201896 | + | 104 | - | - | Toxin |
JNN42_RS10540 | 2202031..2202687 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
JNN42_RS10545 | 2202688..2202879 | - | 192 | WP_001296140.1 | YebW family protein | - |
JNN42_RS10550 | 2202984..2203220 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
JNN42_RS10555 | 2203338..2204777 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Prophage | - | - | 2192490..2217774 | 25284 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T188168 NZ_CP068811:2201793-2201896 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT188168 NZ_CP068811:c2201934-2201663 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT