Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | Hha-TomB/- |
Location | 3882438..3883056 | Replicon | chromosome |
Accession | NZ_CP068810 | ||
Organism | Escherichia coli strain RIVM_C028536 |
Toxin (Protein)
Gene name | Hha | Uniprot ID | H5UYE2 |
Locus tag | JNN60_RS18700 | Protein ID | WP_001291435.1 |
Coordinates | 3882838..3883056 (+) | Length | 73 a.a. |
Antitoxin (Protein)
Gene name | TomB | Uniprot ID | S1PTH5 |
Locus tag | JNN60_RS18695 | Protein ID | WP_000344800.1 |
Coordinates | 3882438..3882812 (+) | Length | 125 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
JNN60_RS18685 | 3877527..3878720 | + | 1194 | WP_001295833.1 | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | - |
JNN60_RS18690 | 3878743..3881892 | + | 3150 | WP_001132480.1 | multidrug efflux RND transporter permease subunit | - |
JNN60_RS18695 | 3882438..3882812 | + | 375 | WP_000344800.1 | Hha toxicity modulator TomB | Antitoxin |
JNN60_RS18700 | 3882838..3883056 | + | 219 | WP_001291435.1 | hemolysin expression modulator Hha | Toxin |
JNN60_RS18705 | 3883228..3883779 | + | 552 | WP_000102564.1 | maltose O-acetyltransferase | - |
JNN60_RS18710 | 3883895..3884365 | + | 471 | WP_000136192.1 | YlaC family protein | - |
JNN60_RS18715 | 3884529..3886079 | + | 1551 | WP_001366446.1 | cyclic-guanylate-specific phosphodiesterase PdeB | - |
JNN60_RS18720 | 3886121..3886474 | - | 354 | WP_001550741.1 | DUF1428 family protein | - |
JNN60_RS18730 | 3886853..3887164 | + | 312 | WP_000409911.1 | MGMT family protein | - |
JNN60_RS18735 | 3887195..3887767 | - | 573 | WP_000779831.1 | YbaY family lipoprotein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 73 a.a. Molecular weight: 8628.00 Da Isoelectric Point: 8.9008
>T188150 WP_001291435.1 NZ_CP068810:3882838-3883056 [Escherichia coli]
MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR
MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR
Download Length: 219 bp
>T188150 NZ_CP090311:c2431227-2430952 [Pseudomonas kielensis]
ATGGAATTGAAGTGGACAAGCAAGGCACTGTCCGACATTGCCAGGCTGTATGAGTTTCTGGCTGCGGTGAATCAGTCTGC
GGCCGCACGCACGGTACAGCAACTTACGGCTGCGCCGATCACGCTGCTGGAAAATCCGCGTATTGGCGAACGCCTGGAAG
AATTTGAGCCTCGGGATGTGCGCCGAATTCAGATCGGCCATTATGAGATGCGTTACGAAATAGTGAATGCCACTATCTAT
CTGCTGCGCCTGTGGCACACCCGTGAGGATCGGTAG
ATGGAATTGAAGTGGACAAGCAAGGCACTGTCCGACATTGCCAGGCTGTATGAGTTTCTGGCTGCGGTGAATCAGTCTGC
GGCCGCACGCACGGTACAGCAACTTACGGCTGCGCCGATCACGCTGCTGGAAAATCCGCGTATTGGCGAACGCCTGGAAG
AATTTGAGCCTCGGGATGTGCGCCGAATTCAGATCGGCCATTATGAGATGCGTTACGAAATAGTGAATGCCACTATCTAT
CTGCTGCGCCTGTGGCACACCCGTGAGGATCGGTAG
Antitoxin
Download Length: 125 a.a. Molecular weight: 14557.39 Da Isoelectric Point: 4.7395
>AT188150 WP_000344800.1 NZ_CP068810:3882438-3882812 [Escherichia coli]
MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAINLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYL
DDTFMLFSSYGINMQDLQKWRKSGNRLFRCFVNATKENPASLSC
MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAINLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYL
DDTFMLFSSYGINMQDLQKWRKSGNRLFRCFVNATKENPASLSC
Download Length: 375 bp
>AT188150 NZ_CP090311:c2431499-2431227 [Pseudomonas kielensis]
ATGGCAACCACCGCGAAAACCCGATCCGTCACGGCCCACGTCCCTGTACAACTCGCCGAAAGGGTCGATTTGATGGCTGA
ACGCCTGGAGCGCTCCAAGAACTGGATCGTCAAACAGGCTCTATCCGCCTGGATCGACCAGGAAGAAGAGCGTAGTCGCC
TGACCCGCGAAGCTTTGGCTGACGTTGACGCTGGCCGCGTAATTGACCACCAAGCTGTCCAGGTCTGGGCAGATAGCCTC
AGCACCGACACCCCGTTGCCGGTACCGCGCTGA
ATGGCAACCACCGCGAAAACCCGATCCGTCACGGCCCACGTCCCTGTACAACTCGCCGAAAGGGTCGATTTGATGGCTGA
ACGCCTGGAGCGCTCCAAGAACTGGATCGTCAAACAGGCTCTATCCGCCTGGATCGACCAGGAAGAAGAGCGTAGTCGCC
TGACCCGCGAAGCTTTGGCTGACGTTGACGCTGGCCGCGTAATTGACCACCAAGCTGTCCAGGTCTGGGCAGATAGCCTC
AGCACCGACACCCCGTTGCCGGTACCGCGCTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
PDB | 2MW2 | |
PDB | 1JW2 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A7U9QBQ5 |