Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2355457..2355728 | Replicon | chromosome |
| Accession | NZ_CP068810 | ||
| Organism | Escherichia coli strain RIVM_C028536 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2355587..2355690 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2355457..2355728 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN60_RS11395 | 2352012..2352674 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JNN60_RS11400 | 2352698..2353354 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| JNN60_RS11405 | 2353456..2353686 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JNN60_RS11410 | 2353825..2354199 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JNN60_RS11415 | 2354203..2355075 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| JNN60_RS11420 | 2355088..2355429 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2355457..2355728 | - | 272 | - | - | Antitoxin |
| - | 2355587..2355690 | + | 104 | - | - | Toxin |
| JNN60_RS11425 | 2355825..2356481 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| JNN60_RS11430 | 2356482..2356673 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JNN60_RS11435 | 2356778..2357014 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JNN60_RS11440 | 2357132..2358571 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T188138 NZ_CP068810:2355587-2355690 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT188138 NZ_CP068810:c2355728-2355457 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
