Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2228694..2228962 | Replicon | chromosome |
| Accession | NZ_CP068809 | ||
| Organism | Escherichia coli strain RIVM_C028497 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2228822..2228924 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2228694..2228962 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN39_RS10340 | 2225246..2225908 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JNN39_RS10345 | 2225932..2226588 | - | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| JNN39_RS10350 | 2226691..2226921 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JNN39_RS10355 | 2227060..2227434 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JNN39_RS10360 | 2227438..2228310 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| JNN39_RS10365 | 2228323..2228664 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2228694..2228962 | - | 269 | - | - | Antitoxin |
| - | 2228822..2228924 | + | 103 | - | - | Toxin |
| JNN39_RS10370 | 2229059..2229715 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| JNN39_RS10375 | 2229716..2229907 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JNN39_RS10380 | 2230012..2230248 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JNN39_RS10385 | 2230366..2231805 | - | 1440 | WP_001298454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T188104 NZ_CP068809:2228822-2228924 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT188104 NZ_CP068809:c2228962-2228694 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
