Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2718223..2718494 | Replicon | chromosome |
| Accession | NZ_CP068806 | ||
| Organism | Escherichia coli strain RIVM_C018576 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2718261..2718364 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2718223..2718494 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN57_RS13145 | 2715380..2716819 | + | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JNN57_RS13150 | 2716937..2717173 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JNN57_RS13155 | 2717278..2717469 | + | 192 | WP_001296140.1 | YebW family protein | - |
| JNN57_RS13160 | 2717470..2718126 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 2718223..2718494 | + | 272 | - | - | Antitoxin |
| - | 2718261..2718364 | - | 104 | - | - | Toxin |
| JNN57_RS13165 | 2718522..2718863 | - | 342 | WP_000976481.1 | YebY family protein | - |
| JNN57_RS13170 | 2718876..2719748 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| JNN57_RS13175 | 2719752..2720126 | - | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| JNN57_RS13180 | 2720265..2720495 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JNN57_RS13185 | 2720597..2721253 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| JNN57_RS13190 | 2721277..2721939 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2709993..2725804 | 15811 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T188016 NZ_CP068806:c2718364-2718261 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT188016 NZ_CP068806:2718223-2718494 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
