Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2285185..2285456 | Replicon | chromosome |
| Accession | NZ_CP068804 | ||
| Organism | Escherichia coli strain RIVM_C018563 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2285315..2285418 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2285185..2285456 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN37_RS11025 | 2281740..2282402 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JNN37_RS11030 | 2282426..2283082 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| JNN37_RS11035 | 2283184..2283414 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JNN37_RS11040 | 2283553..2283927 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JNN37_RS11045 | 2283931..2284803 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| JNN37_RS11050 | 2284816..2285157 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2285185..2285456 | - | 272 | - | - | Antitoxin |
| - | 2285315..2285418 | + | 104 | - | - | Toxin |
| JNN37_RS11055 | 2285553..2286209 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| JNN37_RS11060 | 2286210..2286401 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JNN37_RS11065 | 2286506..2286742 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JNN37_RS11070 | 2286860..2288299 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2277875..2301296 | 23421 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T187946 NZ_CP068804:2285315-2285418 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT187946 NZ_CP068804:c2285456-2285185 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
