Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2034431..2034702 | Replicon | chromosome |
| Accession | NZ_CP068803 | ||
| Organism | Escherichia coli strain RIVM_C018404 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2034561..2034664 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2034431..2034702 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN34_RS09720 | 2030986..2031648 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JNN34_RS09725 | 2031672..2032328 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| JNN34_RS09730 | 2032430..2032660 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JNN34_RS09735 | 2032799..2033173 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| JNN34_RS09740 | 2033177..2034049 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| JNN34_RS09745 | 2034062..2034403 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2034431..2034702 | - | 272 | - | - | Antitoxin |
| - | 2034561..2034664 | + | 104 | - | - | Toxin |
| JNN34_RS09750 | 2034799..2035455 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| JNN34_RS09755 | 2035456..2035647 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JNN34_RS09760 | 2035752..2035988 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JNN34_RS09765 | 2036106..2037545 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T187922 NZ_CP068803:2034561-2034664 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT187922 NZ_CP068803:c2034702-2034431 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
