Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2250564..2250835 | Replicon | chromosome |
| Accession | NZ_CP068801 | ||
| Organism | Escherichia coli strain RIVM_C018220 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2250694..2250797 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2250564..2250835 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN52_RS10855 | 2247119..2247781 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JNN52_RS10860 | 2247805..2248461 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| JNN52_RS10865 | 2248563..2248793 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JNN52_RS10870 | 2248932..2249306 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JNN52_RS10875 | 2249310..2250182 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| JNN52_RS10880 | 2250195..2250536 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2250564..2250835 | - | 272 | - | - | Antitoxin |
| - | 2250694..2250797 | + | 104 | - | - | Toxin |
| JNN52_RS10885 | 2250932..2251588 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| JNN52_RS10890 | 2251589..2251780 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JNN52_RS10895 | 2251885..2252121 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JNN52_RS10900 | 2252239..2253678 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T187867 NZ_CP068801:2250694-2250797 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT187867 NZ_CP068801:c2250835-2250564 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
