Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2334420..2334691 | Replicon | chromosome |
| Accession | NZ_CP068800 | ||
| Organism | Escherichia coli strain RIVM_C017997 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2334550..2334653 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2334420..2334691 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN45_RS11260 | 2330975..2331637 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JNN45_RS11265 | 2331661..2332317 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| JNN45_RS11270 | 2332419..2332649 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JNN45_RS11275 | 2332788..2333162 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JNN45_RS11280 | 2333166..2334038 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| JNN45_RS11285 | 2334051..2334392 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2334550..2334653 | + | 104 | - | - | Toxin |
| JNN45_RS11290 | 2334788..2335444 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| JNN45_RS11295 | 2335445..2335636 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JNN45_RS11300 | 2335741..2335977 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JNN45_RS11305 | 2336095..2337534 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2327110..2350531 | 23421 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T187836 NZ_CP068800:2334550-2334653 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT187836 NZ_CP068800:c2334691-2334420 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
