Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1971636..1971781 | Replicon | chromosome |
| Accession | NZ_CP068798 | ||
| Organism | Klebsiella pneumoniae strain RIVM_C015043 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1971672..1971774 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1971636..1971781 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN64_RS09465 | 1966766..1968826 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| JNN64_RS09470 | 1968830..1969489 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JNN64_RS09475 | 1969568..1969798 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JNN64_RS09480 | 1969911..1970285 | + | 375 | WP_071058708.1 | CopC domain-containing protein YobA | - |
| JNN64_RS09485 | 1970289..1971158 | + | 870 | WP_032420215.1 | copper homeostasis membrane protein CopD | - |
| JNN64_RS09490 | 1971175..1971513 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1971636..1971781 | - | 146 | - | - | Antitoxin |
| - | 1971672..1971774 | + | 103 | - | - | Toxin |
| JNN64_RS09495 | 1972149..1972292 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JNN64_RS09500 | 1972397..1973365 | - | 969 | WP_073971755.1 | VirK/YbjX family protein | - |
| JNN64_RS09505 | 1973522..1974175 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| JNN64_RS09510 | 1974172..1974363 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JNN64_RS09515 | 1974461..1974700 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JNN64_RS09520 | 1974816..1976249 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T187779 NZ_CP068798:1971672-1971774 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT187779 NZ_CP068798:c1971781-1971636 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
