Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2082581..2082726 | Replicon | chromosome |
| Accession | NZ_CP068797 | ||
| Organism | Klebsiella pneumoniae strain RIVM_C014073 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2082617..2082719 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2082581..2082726 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN67_RS10290 | 2077711..2079771 | + | 2061 | WP_032419805.1 | oligopeptidase B | - |
| JNN67_RS10295 | 2079775..2080434 | - | 660 | WP_100097888.1 | exodeoxyribonuclease X | - |
| JNN67_RS10300 | 2080513..2080743 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JNN67_RS10305 | 2080856..2081230 | + | 375 | WP_020316569.1 | CopC domain-containing protein YobA | - |
| JNN67_RS10310 | 2081234..2082103 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| JNN67_RS10315 | 2082120..2082458 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2082581..2082726 | - | 146 | - | - | Antitoxin |
| - | 2082617..2082719 | + | 103 | - | - | Toxin |
| JNN67_RS10320 | 2083094..2083237 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JNN67_RS10325 | 2083342..2084310 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| JNN67_RS10330 | 2084467..2085120 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| JNN67_RS10335 | 2085117..2085308 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JNN67_RS10340 | 2085406..2085645 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JNN67_RS10345 | 2085761..2087194 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2012685..2087149 | 74464 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T187762 NZ_CP068797:2082617-2082719 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT187762 NZ_CP068797:c2082726-2082581 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
